Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.1e-128 463.4 250 100.0
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 2.9e-116 422.2 257 90.7
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 6.4e-92 341.3 250 76.4
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 8.4e-92 340.9 261 75.1
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 3.2e-91 339.0 261 77.8
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 9.2e-91 337.4 254 73.6
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 2.6e-85 319.3 267 67.4
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-82 310.5 265 67.5
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.2e-82 310.5 265 67.5
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.6e-82 310.1 264 66.7
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 2.3e-81 306.2 265 66.4
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 9.3e-75 284.3 275 63.6
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.1e-62 244.2 226 61.5
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 7.9e-42 174.9 233 44.6
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 3.3e-40 169.5 219 48.9
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 5.7e-40 168.7 185 53.5
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.2e-39 166.8 211 48.8
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 3.7e-39 166.0 209 47.8
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 6.3e-39 165.2 152 57.2
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.4e-38 164.1 162 54.3
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 2.4e-38 163.3 162 53.7
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 3.1e-38 162.9 141 60.3
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 9.1e-38 161.4 151 60.3
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 2.6e-37 159.8 218 45.0
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 3.4e-37 159.5 189 50.3
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.3e-36 157.5 194 49.5
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 2.2e-36 156.8 173 50.9
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 2.9e-36 156.4 218 46.8
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.9e-35 153.7 178 46.6
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.9e-35 153.7 163 52.1
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 3.2e-35 152.9 178 48.3
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.2e-34 151.0 220 44.5
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 1.6e-34 150.6 221 45.7
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 3.6e-34 149.4 180 50.0
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 3.6e-34 149.4 249 41.8
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 6.1e-34 148.7 166 51.2
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 7.9e-34 148.3 225 44.4
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.0e-33 147.9 146 56.2
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 1.0e-33 147.9 195 46.7
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 1.4e-33 147.5 254 42.1
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 5.2e-33 145.6 177 48.0
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 6.7e-33 145.2 153 51.0
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 8.8e-33 144.8 146 54.8
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 1.1e-32 144.4 160 52.5
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 2.0e-32 143.7 165 50.3
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 2.6e-32 143.3 182 48.9
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.3e-32 142.9 180 46.1
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 3.3e-32 142.9 185 45.4
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 4.4e-32 142.5 233 39.1
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 4.4e-32 142.5 179 46.4
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 7.4e-32 141.7 222 40.5
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 9.7e-32 141.4 175 46.9
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 9.7e-32 141.4 186 43.0
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.3e-31 141.0 241 37.8
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.7e-31 140.6 220 43.2
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 2.2e-31 140.2 160 48.1
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 3.7e-31 139.4 160 50.0
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 4.8e-31 139.0 181 46.4
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 6.3e-31 138.7 137 53.3
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 1.1e-30 137.9 186 42.5
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 2.4e-30 136.7 134 51.5
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 4.1e-30 136.0 149 51.0
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 5.3e-30 135.6 173 45.1
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 5.3e-30 135.6 176 43.2
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 1.2e-29 134.4 146 52.7
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 1.6e-29 134.0 217 37.8
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.6e-29 134.0 179 44.1
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 7.7e-29 131.7 134 50.0
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 2.9e-28 129.8 158 44.3
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 3.8e-28 129.4 208 41.3
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 8.5e-28 128.3 182 43.4
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 1.1e-27 127.9 208 40.9
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 1.9e-27 127.1 154 44.8
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 8.0e-26 121.7 134 45.5
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.0e-25 121.3 153 43.8
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 2.6e-24 116.7 156 38.5
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 3.3e-24 116.3 164 39.0
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 3.3e-24 116.3 141 44.0
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 9.7e-24 114.8 154 40.3
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 1.3e-23 114.4 153 39.2
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 2.2e-23 113.6 164 39.0
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 2.2e-23 113.6 164 39.0
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 2.2e-23 113.6 158 38.6
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 2.8e-23 113.2 155 38.1
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 4.8e-23 112.5 152 38.8
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 4.8e-23 112.5 157 38.2
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 4.8e-23 112.5 152 37.5
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 6.3e-23 112.1 153 41.2
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 6.3e-23 112.1 166 38.0
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 3.1e-22 109.8 179 35.8
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 3.1e-22 109.8 134 41.8
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 4.1e-22 109.4 106 52.8
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.1e-22 109.4 155 38.7
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 5.3e-22 109.0 190 34.2
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 7.0e-22 108.6 142 38.7
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 7.0e-22 108.6 186 35.5
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.2e-21 107.8 130 40.0
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.2e-21 107.8 151 39.1
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 4.5e-21 105.9 155 40.0
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 4.5e-21 105.9 234 30.8
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 4.5e-21 105.9 223 36.3
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 5.9e-21 105.5 158 34.8
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 5.9e-21 105.5 152 36.8
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 5.9e-21 105.5 130 40.0
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.7e-20 104.0 162 35.8
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 1.7e-20 104.0 137 38.7
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 3.8e-20 102.8 97 59.8
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 6.5e-20 102.1 151 37.7
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 6.5e-20 102.1 148 37.2
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 1.1e-19 101.3 168 33.3
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.5e-19 100.9 133 40.6
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.5e-19 100.9 167 33.5
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 1.5e-19 100.9 155 34.2
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 1.5e-19 100.9 155 34.2
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.5e-19 100.9 152 34.9
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 2.5e-19 100.1 144 38.2
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 3.2e-19 99.8 168 32.7
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 3.2e-19 99.8 167 32.9
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 5.5e-19 99.0 164 35.4
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 7.2e-19 98.6 152 36.8
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.6e-18 97.4 161 34.8
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.7e-18 96.7 152 36.2
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 6.1e-18 95.5 140 37.9
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 6.1e-18 95.5 140 37.9
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 6.1e-18 95.5 145 35.9
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 4.0e-17 92.8 137 36.5
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 2.0e-16 90.5 161 34.2
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 2.6e-16 90.1 149 35.6
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 3.4e-16 89.7 179 33.0
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 3.4e-16 89.7 179 33.0
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 3.4e-16 89.7 179 33.0
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 3.4e-16 89.7 167 32.3
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.4e-16 89.4 154 30.5
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 4.4e-16 89.4 188 31.9
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 4.4e-16 89.4 190 32.1
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 4.4e-16 89.4 190 32.1
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 7.5e-16 88.6 162 31.5
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.3e-15 87.8 139 36.0
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.8e-15 86.7 157 35.0
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 3.7e-15 86.3 128 37.5
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 4.8e-15 85.9 139 34.5
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 8.3e-15 85.1 156 32.1
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.8e-14 84.0 119 39.5
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.1e-14 83.2 95 41.1
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 4.1e-14 82.8 147 34.0
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 7.0e-14 82.0 125 42.4
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 9.1e-14 81.6 150 31.3
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 2.7e-13 80.1 88 40.9
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 3.5e-13 79.7 95 40.0
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.0e-12 78.2 100 41.0
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 1.9e-11 73.9 87 40.2
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.2e-11 73.2 81 50.6
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 6.1e-10 68.9 164 26.2
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 9.8e-08 61.6 89 41.6
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.7e-07 60.8 58 46.6
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 1.1e-06 58.2 115 30.4
Pp3c6_3400 Physcomitrium patens HOM05D005423 ORTHO05D006223 4.1e-06 56.2 100 29.0
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 5.4e-06 55.8 121 27.3


User provided reference genes

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