Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.1e-123 446.8 249 100.0
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 3.4e-117 425.2 251 95.2
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 2.5e-112 409.1 248 91.5
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 7.8e-90 334.3 254 77.2
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 1.4e-86 323.6 254 75.2
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 1.3e-84 317.0 254 74.8
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.9e-83 313.2 245 74.7
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 6.2e-79 298.1 232 75.0
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 8.1e-79 297.7 255 70.6
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 8.1e-79 297.7 255 70.6
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 8.1e-79 297.7 255 70.6
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 8.9e-78 294.3 234 73.9
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 8.9e-78 294.3 234 73.9
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 8.9e-78 294.3 254 70.1
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 2.0e-77 293.1 252 71.8
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 2.6e-77 292.7 233 75.1
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 3.8e-76 288.9 233 74.7
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 3.5e-74 282.3 250 69.6
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 4.3e-72 275.4 251 66.9
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 1.6e-71 273.5 249 67.5
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 1.5e-64 250.4 253 64.0
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.3e-63 247.3 247 65.6
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 1.4e-62 243.8 226 62.8
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 6.7e-57 224.9 250 59.6
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 4.2e-51 205.7 197 58.9
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 7.1e-51 204.9 216 55.1
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 1.2e-50 204.1 192 59.4
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 2.1e-50 203.4 195 58.5
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 7.9e-50 201.4 189 59.8
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.3e-49 200.7 175 75.4
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.3e-49 200.7 219 53.9
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.8e-49 200.3 221 55.2
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.8e-49 200.3 194 58.2
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 5.1e-49 198.7 209 54.5
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 8.7e-49 198.0 189 60.3
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 8.7e-49 198.0 212 53.3
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.8e-47 193.0 216 53.7
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.8e-47 193.0 218 53.7
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 2.8e-47 193.0 189 57.7
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 3.7e-47 192.6 200 56.5
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 6.2e-47 191.8 198 58.1
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 6.2e-47 191.8 198 55.6
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 3.1e-46 189.5 188 57.4
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 5.3e-46 188.7 225 50.2
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 9.0e-46 188.0 212 56.6
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 1.2e-45 187.6 196 56.6
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.5e-45 187.2 193 57.0
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.5e-45 187.2 216 53.2
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.4e-45 186.0 195 54.4
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 1.3e-44 184.1 161 62.7
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.3e-44 184.1 212 52.8
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 1.3e-44 184.1 201 55.2
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 4.9e-44 182.2 195 55.9
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 4.9e-44 182.2 212 52.4
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 4.9e-44 182.2 195 52.8
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 4.9e-44 182.2 240 49.6
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 6.5e-44 181.8 122 90.2
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 6.5e-44 181.8 193 56.0
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.1e-43 181.0 231 51.5
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 1.1e-43 181.0 209 51.2
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.9e-43 180.3 231 47.2
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 2.5e-43 179.9 179 58.1
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 4.2e-43 179.1 216 51.4
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 4.2e-43 179.1 195 53.3
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 9.3e-43 177.9 166 72.9
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 1.2e-42 177.6 281 43.8
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 1.2e-42 177.6 213 50.2
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.2e-42 177.6 238 44.5
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.7e-42 176.4 213 49.8
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 3.5e-42 176.0 202 51.5
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 3.5e-42 176.0 178 57.3
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 4.6e-42 175.6 212 51.9
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 6.0e-42 175.3 227 48.5
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 6.0e-42 175.3 225 49.3
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.0e-41 174.5 176 57.4
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.3e-41 174.1 198 51.5
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 1.8e-41 173.7 197 52.8
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 2.3e-41 173.3 236 44.1
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 3.0e-41 172.9 203 54.7
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 3.9e-41 172.6 194 50.5
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.9e-41 172.6 193 50.8
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 5.1e-41 172.2 195 53.3
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 1.1e-40 171.0 210 48.6
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.1e-40 171.0 190 51.6
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 1.9e-40 170.2 230 45.7
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 3.3e-40 169.5 210 48.1
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 3.7e-39 166.0 216 47.7
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 4.8e-39 165.6 188 52.1
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 4.8e-39 165.6 218 46.8
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 1.1e-38 164.5 195 49.7
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 1.8e-38 163.7 216 46.8
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 6.9e-38 161.8 194 53.6
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 9.0e-38 161.4 179 54.2
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.2e-37 161.0 120 72.5
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 1.2e-37 161.0 184 56.0
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 1.2e-37 161.0 194 47.4
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 1.5e-37 160.6 249 43.0
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 2.0e-37 160.2 173 55.5
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 5.9e-37 158.7 253 42.3
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 1.3e-36 157.5 173 53.2
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 1.3e-36 157.5 207 49.3
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 6.5e-36 155.2 212 45.3
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.9e-35 153.7 187 50.3
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 2.5e-35 153.3 191 50.3
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 4.2e-35 152.5 209 46.9
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 9.4e-35 151.4 188 51.6
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 2.1e-34 150.2 208 48.1
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 2.1e-34 150.2 197 50.3
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 4.6e-34 149.1 190 48.4
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 6.7e-33 145.2 192 49.0
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 8.8e-33 144.8 176 50.6
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 1.1e-32 144.4 160 53.1
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 1.1e-32 144.4 212 42.5
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.9e-32 143.7 199 46.2
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.7e-31 140.6 208 40.4
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 6.3e-31 138.7 142 58.5
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 6.3e-31 138.7 142 59.9
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 2.4e-30 136.7 175 52.6
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 4.1e-30 136.0 192 47.4
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 9.1e-30 134.8 169 52.1
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 2.0e-29 133.7 169 50.9
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 2.6e-29 133.3 205 41.0
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 1.0e-28 131.3 156 52.6
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 1.3e-28 131.0 154 51.9
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.1e-27 127.9 169 50.3
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.1e-27 127.9 142 55.6
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 5.5e-27 125.6 103 72.8
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 5.7e-24 115.5 193 41.5
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 5.7e-24 115.5 214 40.2
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.3e-23 114.4 85 83.5
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 6.3e-23 112.1 191 42.9
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 8.2e-23 111.7 125 51.2
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 7.0e-22 108.6 129 50.4
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 2.0e-21 107.1 274 35.0
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 5.9e-21 105.5 192 42.2
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 5.5e-19 99.0 92 57.6
CARHR196670 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.7e-18 96.7 54 90.7
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 1.8e-17 94.0 171 33.9
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 2.3e-17 93.6 102 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 1.4e-14 84.3 176 31.8
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.7e-12 77.4 81 59.3
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 2.9e-12 76.6 110 44.5
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.5e-11 74.3 148 35.1
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 9.4e-11 71.6 99 42.4
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 3.0e-09 66.6 71 46.5
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 1.3e-07 61.2 119 37.0
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 3.7e-07 59.7 81 43.2
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 3.7e-07 59.7 107 37.4


User provided reference genes

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