Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 0.0e+00 1203.7 608 100.0
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 0.0e+00 1131.7 609 93.4
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 0.0e+00 1086.2 622 89.1
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 5.9e-309 1063.5 623 87.5
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 5.0e-308 1060.4 619 86.9
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 9.5e-307 1056.2 620 87.7
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 7.0e-294 1013.4 616 83.9
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 1.2e-293 1012.7 615 84.4
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.1e-291 1006.1 616 83.3
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 3.2e-278 961.4 616 81.2
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 5.1e-276 954.1 615 79.0
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 6.0e-253 877.5 634 70.5
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.7e-237 825.5 604 70.4
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 1.6e-205 719.9 464 81.2
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.3e-202 710.3 633 58.3
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 2.2e-202 709.5 637 57.5
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 1.1e-201 707.2 602 60.6
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 2.9e-199 699.1 615 59.2
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 8.6e-199 697.6 612 59.2
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 3.2e-198 695.7 614 58.5
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 4.2e-198 695.3 646 56.5
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 5.5e-198 694.9 623 58.3
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 5.2e-196 688.3 612 58.2
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 8.8e-196 687.6 613 58.2
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.6e-195 686.0 605 58.2
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 4.4e-195 685.3 642 56.4
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 4.4e-195 685.3 642 56.4
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 4.4e-195 685.3 609 57.6
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.7e-194 683.3 640 55.5
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.7e-194 683.3 642 55.9
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.1e-193 680.6 642 55.8
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 1.4e-193 680.2 644 55.0
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 2.4e-193 679.5 605 57.7
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 9.2e-193 677.6 609 58.8
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 1.2e-192 677.2 618 56.5
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.6e-192 676.8 608 57.9
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 2.0e-192 676.4 633 55.3
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 3.5e-192 675.6 617 56.4
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 1.0e-191 674.1 637 56.2
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 3.8e-191 672.2 502 65.7
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 6.6e-191 671.4 644 55.4
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 2.5e-190 669.5 538 61.7
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 7.3e-190 667.9 637 54.3
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 4.7e-189 665.2 606 57.4
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 2.6e-187 659.4 602 57.3
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 3.4e-187 659.1 605 56.5
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 4.4e-187 658.7 600 55.7
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 7.5e-187 657.9 625 54.6
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 9.8e-187 657.5 639 55.7
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 4.9e-186 655.2 623 55.1
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 6.4e-186 654.8 639 54.1
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 8.3e-186 654.4 643 53.7
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 5.4e-185 651.7 628 54.9
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 7.8e-184 647.9 655 52.7
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 1.0e-183 647.5 631 53.2
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 3.6e-181 639.0 634 52.8
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 3.6e-181 639.0 634 52.7
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 1.1e-180 637.5 595 54.8
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 1.5e-179 633.6 441 68.0
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 2.2e-178 629.8 596 55.2
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.1e-177 627.5 643 52.7
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 9.2e-177 624.4 624 52.9
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 3.0e-175 619.4 616 53.1
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 4.3e-174 615.5 608 54.3
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 1.2e-173 614.0 633 51.8
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.1e-173 613.2 633 51.2
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.8e-172 610.1 600 51.7
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 1.5e-171 607.1 484 61.6
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 3.4e-171 605.9 640 50.0
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.7e-170 602.4 478 60.7
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.7e-170 602.4 478 60.7
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 5.4e-169 598.6 614 50.2
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 1.6e-168 597.0 612 51.3
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 1.3e-167 594.0 441 63.5
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 2.3e-167 593.2 542 56.3
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 5.2e-164 582.0 610 51.8
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.8e-162 575.9 668 47.0
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 6.4e-162 575.1 620 49.0
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 3.9e-159 565.8 386 68.4
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.9e-159 565.8 661 48.4
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 1.1e-158 564.3 539 54.2
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 4.0e-156 555.8 402 64.2
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 1.7e-154 550.4 601 49.6
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 2.2e-154 550.1 595 50.4
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 1.4e-153 547.4 386 66.8
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 3.2e-153 546.2 531 52.5
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 8.7e-151 538.1 454 55.5
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.5e-150 536.6 553 51.5
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 3.9e-143 512.7 624 47.4
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.7e-143 511.9 391 62.1
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.7e-143 511.9 391 62.1
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 1.1e-142 511.1 387 62.5
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 4.3e-142 509.2 576 49.0
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 3.7e-141 506.1 387 61.5
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 3.4e-139 499.6 507 51.7
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.7e-138 497.3 526 51.3
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.8e-135 487.3 460 52.6
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.7e-135 485.3 517 51.3
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 2.5e-134 483.4 512 50.8
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 9.0e-132 474.9 477 53.5
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.3e-127 460.3 455 53.6
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 8.7e-127 458.4 541 45.3
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 2.9e-122 443.4 456 52.2
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 3.0e-119 433.3 461 48.6
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 1.2e-115 421.4 397 53.1
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 1.2e-115 421.4 472 47.0
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.2e-112 411.4 454 46.9
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 2.1e-112 410.6 454 48.9
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 3.0e-111 406.8 386 55.2
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.7e-109 399.8 471 43.1
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.1e-104 384.0 364 50.3
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 3.7e-101 373.2 264 64.4
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 7.2e-97 359.0 257 65.4
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.9e-90 337.0 524 39.7
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 1.2e-88 331.6 305 52.1
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 4.0e-87 326.6 276 55.4
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 1.1e-84 318.5 450 38.4
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 4.2e-81 306.6 388 43.3
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 3.0e-79 300.4 327 53.2
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 8.9e-71 272.3 203 59.6
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.6e-65 253.1 513 33.5
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 1.5e-62 245.0 160 72.5
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.5e-49 201.8 133 69.9
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.9e-41 174.9 195 41.5
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.3e-34 152.1 124 58.9
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.5e-33 147.9 124 57.3
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 2.4e-31 141.4 250 39.6
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 9.0e-31 139.4 125 51.2
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 3.8e-29 134.0 129 60.5
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.2e-27 129.0 246 37.4
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 6.7e-26 123.2 124 56.5
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 7.4e-25 119.8 193 42.5
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.8e-15 88.6 88 50.0
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 6.9e-15 86.7 220 34.1
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.5e-14 85.5 70 58.6
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.5e-12 78.2 122 37.7
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 7.9e-11 73.2 129 37.2


User provided reference genes

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