Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G27250 Arabidopsis lyrata HOM05D000400 ORTHO05D000575 4.0e-37 157.5 77 100.0
AT5G16350 Arabidopsis thaliana HOM05D000400 ORTHO05D000575 1.5e-20 102.4 53 90.6
AL6G23220 Arabidopsis lyrata HOM05D000400 ORTHO05D000575 5.5e-18 94.0 53 84.9
Carub.0006s1454 Capsella rubella HOM05D000400 ORTHO05D000575 1.6e-17 92.4 51 80.4
AT5G12420 Arabidopsis thaliana HOM05D000400 ORTHO05D000575 2.1e-17 92.0 53 83.0
Carub.0006s1092 Capsella rubella HOM05D000400 ORTHO05D000575 4.6e-17 90.9 53 81.1
Carub.0006s1093 Capsella rubella HOM05D000400 ORTHO05D000575 6.1e-17 90.5 53 79.2
Sp6g31210 Schrenkiella parvula HOM05D000400 ORTHO05D000575 2.3e-16 88.6 52 78.8
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 5.1e-16 87.4 53 79.2
BcaC04g20461 Brassica carinata HOM05D000400 ORTHO05D000575 6.7e-16 87.0 53 75.5
C09p43230 Brassica napus HOM05D000400 ORTHO05D000575 6.7e-16 87.0 53 75.5
BraA10t43173Z Brassica rapa HOM05D000400 ORTHO05D000575 6.7e-16 87.0 53 75.5
Thhalv10013397m.g Eutrema salsugineum HOM05D000400 ORTHO05D000575 6.7e-16 87.0 52 75.0
BcaB08g35701 Brassica carinata HOM05D000400 ORTHO05D000575 1.5e-15 85.9 53 77.4
BolC3t13157H Brassica oleracea HOM05D000400 ORTHO05D000575 1.5e-15 85.9 53 77.4
CARHR200680 Cardamine hirsuta HOM05D000400 ORTHO05D000575 1.9e-15 85.5 51 76.5
A10p10880 Brassica napus HOM05D000400 ORTHO05D000575 2.5e-15 85.1 53 73.6
BcaC03g16841 Brassica carinata HOM05D000400 ORTHO05D000575 9.7e-15 83.2 49 77.6
C02p47210 Brassica napus HOM05D000400 ORTHO05D000575 9.7e-15 83.2 49 77.6
BolC2t10765H Brassica oleracea HOM05D000400 ORTHO05D000575 9.7e-15 83.2 49 77.6
BolC3t13158H Brassica oleracea HOM05D000400 ORTHO05D000575 1.3e-14 82.8 53 75.5
Sp6g31220 Schrenkiella parvula HOM05D000400 ORTHO05D000575 1.6e-14 82.4 53 75.5
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 2.2e-14 82.0 53 75.5
AL8G28090 Arabidopsis lyrata HOM05D000400 ORTHO05D000575 2.8e-14 81.6 52 73.1
Thhalv10015406m.g Eutrema salsugineum HOM05D000400 ORTHO05D000575 2.8e-14 81.6 52 73.1
AT5G53380 Arabidopsis thaliana HOM05D000400 ORTHO05D000575 6.3e-14 80.5 49 73.5
A02p01530 Brassica napus HOM05D000400 ORTHO05D000575 8.2e-14 80.1 49 75.5
BraA02t05133Z Brassica rapa HOM05D000400 ORTHO05D000575 8.2e-14 80.1 49 75.5
CARHR266510 Cardamine hirsuta HOM05D000400 ORTHO05D000575 2.4e-13 78.6 53 67.9
AT5G22490 Arabidopsis thaliana HOM05D000400 ORTHO05D000575 5.3e-13 77.4 53 66.0
Thhalv10015825m.g Eutrema salsugineum HOM05D000400 ORTHO05D000575 5.3e-13 77.4 49 69.4
BcaNung03613 Brassica carinata HOM05D000400 ORTHO05D000575 9.1e-13 76.6 49 71.4
BraA03t09899Z Brassica rapa HOM05D000400 ORTHO05D000575 2.0e-12 75.5 53 67.9
BcaNung03611 Brassica carinata HOM05D000400 ORTHO05D000575 3.4e-12 74.7 49 69.4
BcaNung01191 Brassica carinata HOM05D000400 ORTHO05D000575 4.5e-12 74.3 49 71.4
C02p05750 Brassica napus HOM05D000400 ORTHO05D000575 4.5e-12 74.3 49 71.4
BolC2t06520H Brassica oleracea HOM05D000400 ORTHO05D000575 4.5e-12 74.3 49 71.4
Thhalv10003009m.g Eutrema salsugineum HOM05D000400 ORTHO05D000575 1.0e-11 73.2 52 65.4
Aa31sc402G10 Aethionema arabicum HOM05D000400 ORTHO05D000575 1.3e-11 72.8 52 63.5
AL7G50120 Arabidopsis lyrata HOM05D000400 ORTHO05D000575 1.7e-11 72.4 53 66.0
BolC4t26582H Brassica oleracea HOM05D000400 ORTHO05D000575 3.8e-11 71.2 51 64.7
BcaC02g08841 Brassica carinata HOM05D000400 ORTHO05D000575 5.0e-11 70.9 55 65.5
Aa31LG3G9550 Aethionema arabicum HOM05D000400 ORTHO05D000575 8.5e-11 70.1 52 63.5
Aa31LG5G22070 Aethionema arabicum HOM05D000400 ORTHO05D000575 8.5e-11 70.1 53 62.3
A04p15630 Brassica napus HOM05D000400 ORTHO05D000575 1.4e-10 69.3 51 62.7
BraA04t17198Z Brassica rapa HOM05D000400 ORTHO05D000575 1.4e-10 69.3 51 62.7
BcaB06g27765 Brassica carinata HOM05D000400 ORTHO05D000575 2.5e-10 68.6 51 60.8
CARHR266500 Cardamine hirsuta HOM05D000400 ORTHO05D000575 7.2e-10 67.0 52 57.7
Aa31LG1G10870 Aethionema arabicum HOM05D000400 ORTHO05D000575 9.4e-10 66.6 53 60.4
Aa31LG3G9540 Aethionema arabicum HOM05D000400 ORTHO05D000575 1.6e-09 65.9 52 61.5
Aa31LG6G5100 Aethionema arabicum HOM05D000400 ORTHO05D000575 4.6e-09 64.3 53 56.6
Aa31sc398G40 Aethionema arabicum HOM05D000400 ORTHO05D000575 1.8e-08 62.4 56 57.1
Aa31LG1G10880 Aethionema arabicum HOM05D000400 ORTHO05D000575 2.3e-08 62.0 50 62.0
BcaC07g39391 Brassica carinata HOM05D000400 ORTHO05D000575 5.1e-08 60.8 51 52.9
A06p18560 Brassica napus HOM05D000400 ORTHO05D000575 5.1e-08 60.8 51 52.9
BraA06t24933Z Brassica rapa HOM05D000400 ORTHO05D000575 5.1e-08 60.8 51 52.9
CiPaw.06G010600 Carya illinoinensis HOM05D000400 ORTHO05D000575 5.1e-08 60.8 50 50.0
C08p24160 Brassica napus HOM05D000400 ORTHO05D000575 6.7e-08 60.5 51 51.0
BolC8t50037H Brassica oleracea HOM05D000400 ORTHO05D000575 6.7e-08 60.5 51 51.0
THA.LOC104799976 Tarenaya hassleriana HOM05D000400 ORTHO05D000575 1.1e-07 59.7 47 57.4
THA.LOC104811919 Tarenaya hassleriana HOM05D000400 ORTHO05D000575 1.1e-07 59.7 48 47.9
BraA01t02403Z Brassica rapa HOM05D000400 ORTHO05D000575 1.5e-07 59.3 61 42.6
AL5G28930 Arabidopsis lyrata HOM05D000400 ORTHO05D000575 2.0e-07 58.9 52 50.0
BcaB01g00738 Brassica carinata HOM05D000400 ORTHO05D000575 2.6e-07 58.5 52 50.0
BcaC09g49927 Brassica carinata HOM05D000400 ORTHO05D000575 2.6e-07 58.5 65 44.6
C01p31110 Brassica napus HOM05D000400 ORTHO05D000575 2.6e-07 58.5 65 44.6
BolC1t03047H Brassica oleracea HOM05D000400 ORTHO05D000575 2.6e-07 58.5 65 44.6
AT3G49210 Arabidopsis thaliana HOM05D000400 ORTHO05D000575 3.3e-07 58.2 49 51.0
BcaB05g22958 Brassica carinata HOM05D000400 ORTHO05D000575 3.3e-07 58.2 61 41.0
A01p24910 Brassica napus HOM05D000400 ORTHO05D000575 3.3e-07 58.2 61 41.0
HanXRQChr12g0356991 Helianthus annuus HOM05D000400 ORTHO05D000575 4.4e-07 57.8 51 49.0
HanXRQChr12g0356971 Helianthus annuus HOM05D000400 ORTHO05D000575 5.7e-07 57.4 51 49.0
Migut.F00218 Erythranthe guttata HOM05D000400 ORTHO05D000575 7.4e-07 57.0 58 46.6
Sp5g12870 Schrenkiella parvula HOM05D000400 ORTHO05D000575 7.4e-07 57.0 52 44.2
BolC3t13162H Brassica oleracea HOM05D000400 ORTHO05D000575 9.7e-07 56.6 42 64.3
SGA_v2.0_scaffold44G16798 Striga asiatica HOM05D000400 ORTHO05D000575 9.7e-07 56.6 51 49.0
Sp5g27190 Schrenkiella parvula HOM05D000400 ORTHO05D000575 1.3e-06 56.2 48 47.9
Aa31LG4G17630 Aethionema arabicum HOM05D000400 ORTHO05D000575 1.7e-06 55.8 52 48.1
Carub.0005s1544 Capsella rubella HOM05D000400 ORTHO05D000575 1.7e-06 55.8 48 47.9
Dinv32587 Davidia involucrata HOM05D000400 ORTHO05D000575 1.7e-06 55.8 49 49.0
HanXRQChr12g0356961 Helianthus annuus HOM05D000400 ORTHO05D000575 1.7e-06 55.8 51 47.1
THA.LOC104811920 Tarenaya hassleriana HOM05D000400 ORTHO05D000575 1.7e-06 55.8 58 41.4
AL5G28920 Arabidopsis lyrata HOM05D000400 ORTHO05D000575 2.2e-06 55.5 51 43.1
Carub.0002s1889 Capsella rubella HOM05D000400 ORTHO05D000575 2.2e-06 55.5 48 45.8
Potri.019G070900 Populus trichocarpa HOM05D000400 ORTHO05D000575 2.2e-06 55.5 49 51.0
CiPaw.06G010800 Carya illinoinensis HOM05D000400 ORTHO05D000575 2.8e-06 55.1 50 50.0
Thhalv10010299m.g Eutrema salsugineum HOM05D000400 ORTHO05D000575 2.8e-06 55.1 52 44.2
TWI14G1267 Tripterygium wilfordii HOM05D000400 ORTHO05D000575 2.8e-06 55.1 48 52.1
AT3G49200 Arabidopsis thaliana HOM05D000400 ORTHO05D000575 3.7e-06 54.7 51 41.2
BcaB05g22959 Brassica carinata HOM05D000400 ORTHO05D000575 3.7e-06 54.7 52 40.4
BcaC03g14427 Brassica carinata HOM05D000400 ORTHO05D000575 3.7e-06 54.7 53 43.4
A01p24920 Brassica napus HOM05D000400 ORTHO05D000575 3.7e-06 54.7 52 42.3
C02p18410 Brassica napus HOM05D000400 ORTHO05D000575 3.7e-06 54.7 53 43.4
BolC2t07980H Brassica oleracea HOM05D000400 ORTHO05D000575 3.7e-06 54.7 53 43.4
CiPaw.06G010700 Carya illinoinensis HOM05D000400 ORTHO05D000575 3.7e-06 54.7 50 48.0
Medtr1g008160 Medicago truncatula HOM05D000400 ORTHO05D000575 3.7e-06 54.7 47 53.2
Lsat_1_v5_gn_5_90501 Lactuca sativa HOM05D000400 ORTHO05D000575 4.8e-06 54.3 51 47.1
BcaB05g22036 Brassica carinata HOM05D000400 ORTHO05D000575 6.3e-06 53.9 49 44.9
Haze_00222 Corylus avellana HOM05D000400 ORTHO05D000575 6.3e-06 53.9 47 53.2
Dinv32588 Davidia involucrata HOM05D000400 ORTHO05D000575 6.3e-06 53.9 52 48.1
Lj7C500T10 Lonicera japonica HOM05D000400 ORTHO05D000575 6.3e-06 53.9 49 51.0
PSO063G6110 Papaver somniferum HOM05D000400 ORTHO05D000575 6.3e-06 53.9 48 54.2
Prupe.2G310700 Prunus persica HOM05D000400 ORTHO05D000575 6.3e-06 53.9 53 49.1
QL09p010284 Quercus lobata HOM05D000400 ORTHO05D000575 6.3e-06 53.9 47 53.2
TWI14G0808 Tripterygium wilfordii HOM05D000400 ORTHO05D000575 6.3e-06 53.9 64 43.8
BcaB02g09402 Brassica carinata HOM05D000400 ORTHO05D000575 8.2e-06 53.5 48 50.0
BcaB08g35704 Brassica carinata HOM05D000400 ORTHO05D000575 8.2e-06 53.5 57 40.4
BolC9t57200H Brassica oleracea HOM05D000400 ORTHO05D000575 8.2e-06 53.5 57 40.4
Thhalv10011067m.g Eutrema salsugineum HOM05D000400 ORTHO05D000575 8.2e-06 53.5 52 42.3
Potri.012G014200 Populus trichocarpa HOM05D000400 ORTHO05D000575 8.2e-06 53.5 50 50.0
QL09p009406 Quercus lobata HOM05D000400 ORTHO05D000575 8.2e-06 53.5 52 44.2
SGA_v2.0_scaffold192G40556 Striga asiatica HOM05D000400 ORTHO05D000575 8.2e-06 53.5 68 38.2


User provided reference genes

Program Settings