Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G27200 Arabidopsis lyrata HOM05D003580 ORTHO05D004441 0.0e+00 2088.9 1068 100.0
AT5G16300 Arabidopsis thaliana HOM05D003580 ORTHO05D004441 0.0e+00 2013.4 1068 96.2
Carub.0006s1449 Capsella rubella HOM05D003580 ORTHO05D004441 0.0e+00 1999.2 1068 95.3
Thhalv10012518m.g Eutrema salsugineum HOM05D003580 ORTHO05D004441 0.0e+00 1929.5 1077 91.5
CARHR197010 Cardamine hirsuta HOM05D003580 ORTHO05D004441 0.0e+00 1924.8 1081 91.3
Sp6g27860 Schrenkiella parvula HOM05D003580 ORTHO05D004441 0.0e+00 1919.1 1077 91.1
BolC9t58909H Brassica oleracea HOM05D003580 ORTHO05D004441 0.0e+00 1858.2 1073 88.7
BraA10t44342Z Brassica rapa HOM05D003580 ORTHO05D004441 0.0e+00 1850.5 1073 88.6
BcaB01g04993 Brassica carinata HOM05D003580 ORTHO05D004441 0.0e+00 1842.4 1072 88.9
Aa31LG11G13320 Aethionema arabicum HOM05D003580 ORTHO05D004441 0.0e+00 1830.8 1102 85.9
A03p07660 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1823.9 1072 87.7
C03p08900 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1811.2 1072 87.1
BraA03t10094Z Brassica rapa HOM05D003580 ORTHO05D004441 0.0e+00 1811.2 1072 87.5
BolC3t13385H Brassica oleracea HOM05D003580 ORTHO05D004441 0.0e+00 1808.9 1072 87.0
A10p22770 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1790.0 1022 89.0
C09p60740 Brassica napus HOM05D003580 ORTHO05D004441 0.0e+00 1787.7 1023 89.1
THA.LOC104820933 Tarenaya hassleriana HOM05D003580 ORTHO05D004441 0.0e+00 1669.8 1081 80.3
Potri.010G177200 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1451.8 1084 69.4
Ciclev10014110m.g Citrus clementina HOM05D003580 ORTHO05D004441 0.0e+00 1421.4 1077 69.2
Sabra10G0136200 Salix brachista HOM05D003580 ORTHO05D004441 0.0e+00 1418.7 1110 66.4
Potri.008G079700 Populus trichocarpa HOM05D003580 ORTHO05D004441 0.0e+00 1411.4 1084 67.8
Manes.13G155600 Manihot esculenta HOM05D003580 ORTHO05D004441 0.0e+00 1404.4 1083 68.1
TWI53G0960 Tripterygium wilfordii HOM05D003580 ORTHO05D004441 0.0e+00 1375.5 1078 66.2
Sabra08G0059400 Salix brachista HOM05D003580 ORTHO05D004441 0.0e+00 1372.1 1130 64.0
QL01p005312 Quercus lobata HOM05D003580 ORTHO05D004441 0.0e+00 1363.2 1062 66.5
Gohir.D04G010100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1359.0 1069 65.9
Gorai.012G011900 Gossypium raimondii HOM05D003580 ORTHO05D004441 0.0e+00 1358.2 1069 65.9
CiPaw.04G180400 Carya illinoinensis HOM05D003580 ORTHO05D004441 0.0e+00 1354.7 1062 66.4
Gohir.A05G405500 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1349.3 1069 65.7
Gorai.009G355000 Gossypium raimondii HOM05D003580 ORTHO05D004441 0.0e+00 1336.2 1065 65.2
Gohir.A04G049300 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1333.5 1065 64.5
Gohir.D05G331100 Gossypium hirsutum HOM05D003580 ORTHO05D004441 0.0e+00 1332.0 1065 65.0
Thecc.05G131900 Theobroma cacao HOM05D003580 ORTHO05D004441 0.0e+00 1328.9 1067 65.2
MELO3C008782.2 Cucumis melo HOM05D003580 ORTHO05D004441 0.0e+00 1327.8 1068 64.4
TAR362G0544 Trochodendron aralioides HOM05D003580 ORTHO05D004441 0.0e+00 1327.0 1059 64.8
TAR633G0565 Trochodendron aralioides HOM05D003580 ORTHO05D004441 0.0e+00 1326.6 1063 64.6
CsaV3_2G009280 Cucumis sativus L. HOM05D003580 ORTHO05D004441 0.0e+00 1322.4 1068 64.4
Eucgr.G00871 Eucalyptus grandis HOM05D003580 ORTHO05D004441 0.0e+00 1321.2 1074 63.7
ClCG11G011150 Citrullus lanatus HOM05D003580 ORTHO05D004441 0.0e+00 1317.0 1068 64.0
PGR042G2902 Punica granatum HOM05D003580 ORTHO05D004441 0.0e+00 1316.2 1068 64.0
Cfa002307 Carpinus fangiana HOM05D003580 ORTHO05D004441 0.0e+00 1309.7 1063 65.0
COL.COLO4_02821 Corchorus olitorius HOM05D003580 ORTHO05D004441 0.0e+00 1309.3 1095 62.4
arahy.Tifrunner.gnm1.ann1.TPGZ8P Arachis hypogaea HOM05D003580 ORTHO05D004441 0.0e+00 1308.1 1066 65.1
arahy.Tifrunner.gnm1.ann1.U0AKQE Arachis hypogaea HOM05D003580 ORTHO05D004441 0.0e+00 1306.2 1066 65.0
Actinidia22096 Actinidia chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1305.4 1075 63.3
Sed0022441 Sechium edule HOM05D003580 ORTHO05D004441 0.0e+00 1293.9 1059 63.0
Ca_10488_v3 Cicer arietinum L. HOM05D003580 ORTHO05D004441 0.0e+00 1291.9 1060 63.6
Lj5g0021899 Lotus japonicus HOM05D003580 ORTHO05D004441 0.0e+00 1288.9 1059 63.7
Nn1g09424 Nelumbo nucifera HOM05D003580 ORTHO05D004441 0.0e+00 1286.2 1077 62.1
VMungo0720G1645 Vigna mungo HOM05D003580 ORTHO05D004441 0.0e+00 1282.3 1078 62.7
Sed0017385 Sechium edule HOM05D003580 ORTHO05D004441 0.0e+00 1280.0 1071 62.3
Glyma.20G188500 Glycine max HOM05D003580 ORTHO05D004441 0.0e+00 1278.8 1057 63.7
Phvul.007G105200 Phaseolus vulgaris HOM05D003580 ORTHO05D004441 0.0e+00 1278.5 1081 63.2
Nn5g28173 Nelumbo nucifera HOM05D003580 ORTHO05D004441 0.0e+00 1276.5 1068 62.3
Haze_24513 Corylus avellana HOM05D003580 ORTHO05D004441 0.0e+00 1276.2 1153 60.3
Lalb_Chr02g0151301 Lupinus albus HOM05D003580 ORTHO05D004441 0.0e+00 1274.6 1065 63.8
Psat6g176280 Pisum sativum HOM05D003580 ORTHO05D004441 0.0e+00 1274.6 1057 63.6
CANSAT64G0454 Cannabis sativa HOM05D003580 ORTHO05D004441 0.0e+00 1269.6 1057 62.8
Glyma.10G201900 Glycine max HOM05D003580 ORTHO05D004441 0.0e+00 1265.8 1078 62.4
Lalb_Chr21g0313231 Lupinus albus HOM05D003580 ORTHO05D004441 0.0e+00 1263.1 1066 62.9
Solyc03g120700.3 Solanum lycopersicum HOM05D003580 ORTHO05D004441 0.0e+00 1262.7 1072 61.9
Sopen03g039520 Solanum pennellii HOM05D003580 ORTHO05D004441 0.0e+00 1261.1 1072 61.8
PGSC0003DMG400002624 Solanum tuberosum HOM05D003580 ORTHO05D004441 0.0e+00 1259.6 1072 61.9
Lj2A356T45 Lonicera japonica HOM05D003580 ORTHO05D004441 0.0e+00 1253.8 1059 61.9
GSVIVG01006267001 Vitis vinifera HOM05D003580 ORTHO05D004441 0.0e+00 1251.9 1044 62.8
Actinidia30566 Actinidia chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1244.6 1075 61.4
Hund21939 Selenicereus undatus HOM05D003580 ORTHO05D004441 0.0e+00 1237.2 1073 61.3
Duzib140G0001 Durio zibethinus HOM05D003580 ORTHO05D004441 0.0e+00 1229.2 1062 61.4
vmacro09152 Vaccinium macrocarpon HOM05D003580 ORTHO05D004441 0.0e+00 1223.0 1186 56.7
HanXRQChr01g0024861 Helianthus annuus HOM05D003580 ORTHO05D004441 0.0e+00 1222.6 1057 60.9
PSO675G0774 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1217.6 1069 59.6
EL10Ac4g10045 Beta vulgaris HOM05D003580 ORTHO05D004441 0.0e+00 1213.7 1070 61.5
Cc06_g21420 Coffea canephora HOM05D003580 ORTHO05D004441 0.0e+00 1213.7 1066 61.0
AUR62000253 Chenopodium quinoa HOM05D003580 ORTHO05D004441 0.0e+00 1213.4 1070 61.4
PSO063G3475 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1211.4 1057 59.8
PSO732G0238 Papaver somniferum HOM05D003580 ORTHO05D004441 0.0e+00 1210.3 1059 59.9
Migut.J00662 Erythranthe guttata HOM05D003580 ORTHO05D004441 0.0e+00 1208.4 1077 58.3
HanXRQChr12g0356901 Helianthus annuus HOM05D003580 ORTHO05D004441 0.0e+00 1208.0 1074 59.4
MD08G1237500 Malus domestica HOM05D003580 ORTHO05D004441 0.0e+00 1196.4 1062 60.5
Prupe.1G575000 Prunus persica HOM05D003580 ORTHO05D004441 0.0e+00 1196.4 1066 60.2
Lsat_1_v5_gn_1_58860 Lactuca sativa HOM05D003580 ORTHO05D004441 0.0e+00 1191.8 1074 60.1
DCAR_019887 Daucus carota HOM05D003580 ORTHO05D004441 0.0e+00 1189.1 1075 58.9
Aqoxy6G00271 Aquilegia oxysepala HOM05D003580 ORTHO05D004441 0.0e+00 1187.2 1074 57.8
Dinv20243 Davidia involucrata HOM05D003580 ORTHO05D004441 0.0e+00 1186.0 1075 59.3
MBI18_g04901_MAGBIO Magnolia biondii HOM05D003580 ORTHO05D004441 0.0e+00 1186.0 1051 58.4
Rhsim04G0086300 Rhododendron simsii HOM05D003580 ORTHO05D004441 0.0e+00 1186.0 1171 56.2
ECA248G2481 Erigeron canadensis HOM05D003580 ORTHO05D004441 0.0e+00 1185.6 1058 58.3
RcHm_v2.0_Chr7g0220971 Rosa chinensis HOM05D003580 ORTHO05D004441 0.0e+00 1184.1 1066 60.5
CAN.G438.18 Capsicum annuum HOM05D003580 ORTHO05D004441 0.0e+00 1180.6 1011 61.1
Ah.04g159420 Amaranthus hybridus HOM05D003580 ORTHO05D004441 0.0e+00 1173.7 1093 58.4
Oeu011931.1 Olea europaea HOM05D003580 ORTHO05D004441 0.0e+00 1173.7 1080 57.7
MD15G1429400 Malus domestica HOM05D003580 ORTHO05D004441 0.0e+00 1168.7 1061 59.2
MSTRG.19281 Avicennia marina HOM05D003580 ORTHO05D004441 0.0e+00 1166.0 1063 57.3
TPR.G2546 Trifolium pratense HOM05D003580 ORTHO05D004441 0.0e+00 1160.6 1056 59.4
AUR62006600 Chenopodium quinoa HOM05D003580 ORTHO05D004441 0.0e+00 1155.6 1069 59.4
FAN18G2191 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1138.3 1070 58.2
FAN08G0025 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1129.4 1060 58.2
Peaxi162Scf00076g00824 Petunia axillaris HOM05D003580 ORTHO05D004441 0.0e+00 1125.2 1076 57.3
FAN04G1111 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1114.8 1060 57.6
CSS0030366 Camellia sinensis var. sinensis HOM05D003580 ORTHO05D004441 0.0e+00 1106.7 955 60.9
Medtr1g492710 Medicago truncatula HOM05D003580 ORTHO05D004441 0.0e+00 1105.1 1108 54.8
Oeu055491.1 Olea europaea HOM05D003580 ORTHO05D004441 0.0e+00 1104.0 1008 58.0
FAN13G3018 Fragaria x ananassa HOM05D003580 ORTHO05D004441 0.0e+00 1075.5 1001 58.0
unitig_749.g14304 Utricularia gibba HOM05D003580 ORTHO05D004441 2.6e-307 1058.9 1098 52.5
Sc16g0010760 Simmondsia chinensis HOM05D003580 ORTHO05D004441 2.2e-306 1055.8 899 60.6
ATR0743G251 Amborella trichopoda HOM05D003580 ORTHO05D004441 3.6e-301 1038.5 1069 52.2
FvH4_5g28760 Fragaria vesca HOM05D003580 ORTHO05D004441 9.2e-297 1023.8 940 58.0
CDE04G2219 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 1.0e-292 1010.4 1009 53.5
SGA_v2.0_scaffold31G12889 Striga asiatica HOM05D003580 ORTHO05D004441 2.6e-291 1005.7 998 54.4
Cpa.g.sc440.1 Carica papaya HOM05D003580 ORTHO05D004441 7.5e-291 1004.2 745 69.3
HPP92_017521 Vanilla planifolia HOM05D003580 ORTHO05D004441 9.8e-291 1003.8 1099 51.0
SHI02481 Sapria himalayana HOM05D003580 ORTHO05D004441 2.5e-286 989.2 1128 48.3
SGA_v2.0_scaffold13G06689 Striga asiatica HOM05D003580 ORTHO05D004441 2.8e-285 985.7 911 56.4
Zm00001eb369950 Zea mays HOM05D003580 ORTHO05D004441 4.0e-276 955.3 1084 48.6
Zm00001eb151630 Zea mays HOM05D003580 ORTHO05D004441 1.9e-273 946.4 1087 48.0
Os01g0777000 Oryza sativa ssp. japonica HOM05D003580 ORTHO05D004441 7.1e-273 944.5 1033 49.5
Atru.chr10.106 Acer truncatum HOM05D003580 ORTHO05D004441 1.6e-264 916.8 709 67.7
Atru.chr10.124 Acer truncatum HOM05D003580 ORTHO05D004441 5.8e-259 898.3 693 67.5
Nitab4.5_0000001g0420 Nicotiana tabacum HOM05D003580 ORTHO05D004441 1.9e-246 856.7 1067 47.6
SEGI_21118 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 3.6e-245 852.4 972 47.7
SGA_v2.0_scaffold31G12887 Striga asiatica HOM05D003580 ORTHO05D004441 4.5e-235 818.9 935 49.5
Nitab4.5_0000693g0020 Nicotiana tabacum HOM05D003580 ORTHO05D004441 8.2e-221 771.5 1004 45.9
Mapoly0006s0304 Marchantia polymorpha HOM05D003580 ORTHO05D004441 2.7e-208 729.9 1135 39.4
Pp3c21_18130 Physcomitrium patens HOM05D003580 ORTHO05D004441 1.5e-198 697.6 1109 39.1
Dinv14590 Davidia involucrata HOM05D003580 ORTHO05D004441 1.4e-196 691.0 589 61.6
AagrBONN_evm.TU.Sc2ySwM_228.612 Anthoceros agrestis HOM05D003580 ORTHO05D004441 1.8e-191 674.1 1136 38.2
SMO116G0219 Selaginella moellendorffii HOM05D003580 ORTHO05D004441 3.4e-174 616.7 1050 36.5
Cfa002308 Carpinus fangiana HOM05D003580 ORTHO05D004441 9.8e-174 615.1 505 63.6
Dinv14589 Davidia involucrata HOM05D003580 ORTHO05D004441 6.0e-163 579.3 461 65.3
SEGI_09994 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.0e-162 576.2 664 46.5
Atru.chr10.123 Acer truncatum HOM05D003580 ORTHO05D004441 2.3e-130 471.1 373 66.0
Pp3c18_6580 Physcomitrium patens HOM05D003580 ORTHO05D004441 2.8e-120 437.6 747 37.3
Eucgr.A01176 Eucalyptus grandis HOM05D003580 ORTHO05D004441 1.4e-119 435.3 502 48.6
Atru.chr10.105 Acer truncatum HOM05D003580 ORTHO05D004441 9.7e-113 412.5 328 67.1
CDE02G3888 Ceratophyllum demersum HOM05D003580 ORTHO05D004441 2.2e-109 401.4 462 50.6
BcaNung02234 Brassica carinata HOM05D003580 ORTHO05D004441 6.7e-106 389.8 334 67.7
SEGI_02361 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.2e-102 379.0 402 52.7
CBR_g38826 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-89 335.9 480 40.8
Pp3c22_14630 Physcomitrium patens HOM05D003580 ORTHO05D004441 5.2e-82 310.5 1013 28.3
SEGI_02603 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.5e-65 253.4 390 39.0
SEGI_41100 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 6.6e-61 240.4 363 38.6
SEGI_26119 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.0e-55 220.3 287 40.4
MCO16G457 Micromonas commoda HOM05D003580 ORTHO05D004441 1.2e-54 219.5 1001 22.6
Cre14.g628050 Chlamydomonas reinhardtii HOM05D003580 ORTHO05D004441 1.6e-54 219.2 1266 23.1
Cpa.g.sc272.6 Carica papaya HOM05D003580 ORTHO05D004441 1.0e-53 216.5 160 68.8
SGA_v2.0_scaffold1489G53965 Striga asiatica HOM05D003580 ORTHO05D004441 5.0e-53 214.2 201 56.2
PRCOL_00004619 Prasinoderma coloniale HOM05D003580 ORTHO05D004441 3.6e-51 208.0 1019 22.7
QL01p051634 Quercus lobata HOM05D003580 ORTHO05D004441 6.8e-50 203.8 298 41.3
SEGI_10162 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.9e-48 198.4 289 38.4
CBR_g38824 Chara braunii HOM05D003580 ORTHO05D000002 7.0e-47 193.7 299 40.1
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 8.1e-43 180.3 160 55.6
arahy.Tifrunner.gnm1.ann1.G7UC7Z Arachis hypogaea HOM05D003580 ORTHO05D004441 5.2e-42 177.6 254 44.1
QL01p051611 Quercus lobata HOM05D003580 ORTHO05D004441 4.4e-41 174.5 119 74.8
SEGI_40357 Sequoiadendron giganteum HOM05D003580 ORTHO05D000003 4.4e-41 174.5 239 37.7
SEGI_20620 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.1e-39 169.9 167 48.5
BcaB04g17891 Brassica carinata HOM05D003580 ORTHO05D004441 2.7e-38 165.2 92 90.2
FvH4_3g34230 Fragaria vesca HOM05D003580 ORTHO05D004441 3.0e-37 161.8 163 52.8
SEGI_21703 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.9e-36 159.1 185 44.9
SEGI_17593 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.5e-36 158.7 159 46.5
SEGI_22494 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 2.6e-33 148.7 136 50.0
TPR.G7717 Trifolium pratense HOM05D003580 ORTHO05D004441 5.8e-33 147.5 110 65.5
SEGI_01451 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.1e-31 143.3 154 44.2
SEGI_10836 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.6e-30 139.4 142 45.1
Actinidia22485 Actinidia chinensis HOM05D003580 ORTHO05D004441 4.6e-30 137.9 194 43.3
SEGI_12986 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.1e-29 134.4 181 38.7
SEGI_37648 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.7e-27 127.9 122 50.0
SEGI_18317 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.8e-25 120.9 311 29.3
Cpa.g.c39794 Carica papaya HOM05D003580 ORTHO05D004441 6.4e-24 117.5 65 89.2
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 1.1e-23 116.7 125 44.0
SEGI_00259 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.7e-21 109.4 130 42.3
SEGI_23236 Sequoiadendron giganteum HOM05D003580 ORTHO05D000001 1.1e-20 106.7 151 39.1
SEGI_40013 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.9e-20 105.9 131 41.2
SEGI_37860 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 4.8e-19 101.3 129 38.8
QL01p051624 Quercus lobata HOM05D003580 ORTHO05D004441 1.1e-18 100.1 102 52.9
SEGI_13143 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 5.3e-18 97.8 103 43.7
SEGI_07846 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 1.2e-17 96.7 98 48.0
SEGI_32072 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 7.1e-15 87.4 81 46.9
PSO063G6607 Papaver somniferum HOM05D003580 ORTHO05D004441 1.6e-14 86.3 97 47.4
SEGI_06299 Sequoiadendron giganteum HOM05D003580 ORTHO05D019257 1.8e-13 82.8 68 57.4
SEGI_00546 Sequoiadendron giganteum HOM05D003580 ORTHO05D004441 8.7e-13 80.5 81 44.4
VMungo1383G0656 Vigna mungo HOM05D003580 ORTHO05D004441 2.8e-11 75.5 52 75.0
Actinidia35884 Actinidia chinensis HOM05D000084 ORTHO05D014724 1.6e-06 59.7 81 45.7


User provided reference genes

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