Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G26940 Arabidopsis lyrata HOM05D007149 ORTHO05D008956 5.4e-47 190.7 96 100.0
Carub.0006s1425 Capsella rubella HOM05D007149 ORTHO05D008956 1.0e-45 186.4 96 96.9
CARHR197250 Cardamine hirsuta HOM05D007149 ORTHO05D008956 2.3e-45 185.3 96 95.8
AT5G16060 Arabidopsis thaliana HOM05D007149 ORTHO05D008956 2.9e-45 184.9 96 95.8
Thhalv10015129m.g Eutrema salsugineum HOM05D007149 ORTHO05D008956 7.2e-44 180.3 96 93.8
A10p23000 Brassica napus HOM05D007149 ORTHO05D008956 2.1e-43 178.7 93 94.6
BraA10t44369Z Brassica rapa HOM05D007149 ORTHO05D008956 2.1e-43 178.7 93 94.6
Sp6g28070 Schrenkiella parvula HOM05D007149 ORTHO05D008956 2.1e-43 178.7 96 92.7
BcaC04g18912 Brassica carinata HOM05D007149 ORTHO05D008956 2.8e-43 178.3 93 93.5
C09p60970 Brassica napus HOM05D007149 ORTHO05D008956 2.8e-43 178.3 93 93.5
BolC9t58944H Brassica oleracea HOM05D007149 ORTHO05D008956 2.8e-43 178.3 93 93.5
BcaB08g36883 Brassica carinata HOM05D007149 ORTHO05D008956 4.7e-43 177.6 92 95.7
Aa31LG11G13550 Aethionema arabicum HOM05D007149 ORTHO05D008956 5.7e-41 170.6 96 85.4
THA.LOC104827153 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 2.3e-37 158.7 93 87.1
THA.LOC104803005 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 6.6e-37 157.1 90 86.7
Ciclev10013207m.g Citrus clementina HOM05D007149 ORTHO05D008956 9.5e-36 153.3 86 84.9
Cfa007939 Carpinus fangiana HOM05D007149 ORTHO05D008956 3.6e-35 151.4 89 82.0
TWI74G0718 Tripterygium wilfordii HOM05D007149 ORTHO05D008956 3.6e-35 151.4 88 81.8
QL02p051591 Quercus lobata HOM05D007149 ORTHO05D008956 1.4e-34 149.4 86 83.7
CiPaw.04G040600 Carya illinoinensis HOM05D007149 ORTHO05D008956 1.8e-34 149.1 93 78.5
Manes.01G108800 Manihot esculenta HOM05D007149 ORTHO05D008956 1.8e-34 149.1 88 80.7
Nn4g23775 Nelumbo nucifera HOM05D007149 ORTHO05D008956 1.8e-34 149.1 89 78.7
CSS0003707 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 4.0e-34 147.9 85 83.5
Cpa.g.sc179.16 Carica papaya HOM05D007149 ORTHO05D008956 6.8e-34 147.1 90 81.1
Lsat_1_v5_gn_3_78860 Lactuca sativa HOM05D007149 ORTHO05D008956 6.8e-34 147.1 86 80.2
Dinv34841 Davidia involucrata HOM05D007149 ORTHO05D008956 8.9e-34 146.7 88 79.5
HanXRQChr12g0376461 Helianthus annuus HOM05D007149 ORTHO05D008956 8.9e-34 146.7 87 80.5
CDE11G0018 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 1.2e-33 146.4 92 76.1
COL.COLO4_16183 Corchorus olitorius HOM05D007149 ORTHO05D008956 1.2e-33 146.4 86 82.6
Hma1.2p1_0550F.1_g177300 Hydrangea macrophylla HOM05D007149 ORTHO05D008956 1.2e-33 146.4 88 78.4
CSS0003918 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 1.5e-33 146.0 85 82.4
Migut.H00206 Erythranthe guttata HOM05D007149 ORTHO05D008956 1.5e-33 146.0 93 76.3
CiPaw.03G060400 Carya illinoinensis HOM05D007149 ORTHO05D008956 2.0e-33 145.6 92 78.3
Ah.10g037580 Amaranthus hybridus HOM05D007149 ORTHO05D008956 2.6e-33 145.2 89 77.5
CANSAT64G1005 Cannabis sativa HOM05D007149 ORTHO05D008956 2.6e-33 145.2 89 77.5
Eucgr.J01478 Eucalyptus grandis HOM05D007149 ORTHO05D008956 3.4e-33 144.8 86 81.4
Gohir.D07G076000 Gossypium hirsutum HOM05D007149 ORTHO05D008956 4.4e-33 144.4 89 77.5
Thecc.04G136400 Theobroma cacao HOM05D007149 ORTHO05D008956 4.4e-33 144.4 89 79.8
Gohir.A07G071500 Gossypium hirsutum HOM05D007149 ORTHO05D008956 5.8e-33 144.1 89 77.5
Gorai.001G080200 Gossypium raimondii HOM05D007149 ORTHO05D008956 5.8e-33 144.1 89 77.5
Ca_13737_v3 Cicer arietinum L. HOM05D007149 ORTHO05D008956 7.5e-33 143.7 86 77.9
Sabra17G0093700 Salix brachista HOM05D007149 ORTHO05D008956 1.7e-32 142.5 86 77.9
Actinidia36312 Actinidia chinensis HOM05D007149 ORTHO05D008956 2.9e-32 141.7 85 77.6
Actinidia15873 Actinidia chinensis HOM05D007149 ORTHO05D008956 3.7e-32 141.4 86 76.7
FvH4_6g45250 Fragaria vesca HOM05D007149 ORTHO05D008956 3.7e-32 141.4 92 70.7
FAN09G4869 Fragaria x ananassa HOM05D007149 ORTHO05D008956 3.7e-32 141.4 92 70.7
FAN14G5255 Fragaria x ananassa HOM05D007149 ORTHO05D008956 3.7e-32 141.4 92 70.7
Os03g0257900 Oryza sativa ssp. japonica HOM05D007149 ORTHO05D008956 3.7e-32 141.4 86 79.1
Hund13727 Selenicereus undatus HOM05D007149 ORTHO05D008956 3.7e-32 141.4 90 73.3
Potri.017G113401 Populus trichocarpa HOM05D007149 ORTHO05D008956 4.9e-32 141.0 86 79.1
Atru.chr8.867 Acer truncatum HOM05D007149 ORTHO05D008956 6.4e-32 140.6 86 80.2
CAN.G953.15 Capsicum annuum HOM05D007149 ORTHO05D008956 6.4e-32 140.6 83 80.7
RcHm_v2.0_Chr2g0162971 Rosa chinensis HOM05D007149 ORTHO05D008956 6.4e-32 140.6 92 69.6
Cc07_g08920 Coffea canephora HOM05D007149 ORTHO05D008956 8.3e-32 140.2 86 79.1
Medtr0024s0060 Medicago truncatula HOM05D007149 ORTHO05D008956 8.3e-32 140.2 86 76.7
Solyc02g063085.1 Solanum lycopersicum HOM05D007149 ORTHO05D008956 8.3e-32 140.2 83 79.5
Lalb_Chr04g0257361 Lupinus albus HOM05D007149 ORTHO05D008956 1.1e-31 139.8 89 75.3
MD07G1095900 Malus domestica HOM05D007149 ORTHO05D008956 1.1e-31 139.8 87 77.0
HPP92_011090 Vanilla planifolia HOM05D007149 ORTHO05D008956 1.1e-31 139.8 88 73.9
vmacro05569 Vaccinium macrocarpon HOM05D007149 ORTHO05D008956 1.4e-31 139.4 87 75.9
ATR0665G039 Amborella trichopoda HOM05D007149 ORTHO05D008956 1.9e-31 139.0 86 75.6
Zm00001eb011230 Zea mays HOM05D007149 ORTHO05D008956 1.9e-31 139.0 86 75.6
DCAR_017207 Daucus carota HOM05D007149 ORTHO05D008956 2.4e-31 138.7 88 73.9
Peaxi162Scf00501g00121 Petunia axillaris HOM05D007149 ORTHO05D008956 2.4e-31 138.7 88 75.0
unitig_899.g14509 Utricularia gibba HOM05D007149 ORTHO05D008956 3.2e-31 138.3 88 77.3
Phvul.004G064400 Phaseolus vulgaris HOM05D007149 ORTHO05D008956 4.1e-31 137.9 83 75.9
Aqoxy3G03934 Aquilegia oxysepala HOM05D007149 ORTHO05D008956 7.0e-31 137.1 88 73.9
CsaV3_5G039180 Cucumis sativus L. HOM05D007149 ORTHO05D008956 7.0e-31 137.1 86 74.4
Aa31LG2G17140 Aethionema arabicum HOM05D007149 ORTHO05D008956 1.2e-30 136.3 77 83.1
EL10Ac2g04594 Beta vulgaris HOM05D007149 ORTHO05D008956 1.2e-30 136.3 89 70.8
Carub.0055s0008 Capsella rubella HOM05D007149 ORTHO05D008956 1.6e-30 136.0 68 97.1
GSVIVG01031069001 Vitis vinifera HOM05D007149 ORTHO05D008956 1.6e-30 136.0 86 73.3
Glyma.19G046200 Glycine max HOM05D007149 ORTHO05D008956 2.0e-30 135.6 83 75.9
MELO3C022093.2 Cucumis melo HOM05D007149 ORTHO05D008956 2.7e-30 135.2 86 74.4
MD17G1105000 Malus domestica HOM05D007149 ORTHO05D008956 2.7e-30 135.2 86 75.6
PGR004G0481 Punica granatum HOM05D007149 ORTHO05D008956 2.7e-30 135.2 80 78.8
Lj2g0020616 Lotus japonicus HOM05D007149 ORTHO05D008956 4.6e-30 134.4 89 70.8
PSO782G5258 Papaver somniferum HOM05D007149 ORTHO05D008956 6.0e-30 134.0 84 76.2
Psat1g079040 Pisum sativum HOM05D007149 ORTHO05D008956 6.0e-30 134.0 86 73.3
FAN09G3419 Fragaria x ananassa HOM05D007149 ORTHO05D008956 1.3e-29 132.9 103 63.1
Sc11g0008240 Simmondsia chinensis HOM05D007149 ORTHO05D008956 1.3e-29 132.9 93 73.1
Sed0025185 Sechium edule HOM05D007149 ORTHO05D008956 2.3e-29 132.1 87 73.6
PSO063G3907 Papaver somniferum HOM05D007149 ORTHO05D008956 5.0e-29 131.0 84 75.0
FAN02G3200 Fragaria x ananassa HOM05D007149 ORTHO05D008956 5.6e-28 127.5 104 59.6
Duzib133G0440 Durio zibethinus HOM05D007149 ORTHO05D008956 7.3e-28 127.1 124 57.3
Nn3g17784 Nelumbo nucifera HOM05D007149 ORTHO05D008956 6.2e-27 124.0 91 68.1
arahy.Tifrunner.gnm1.ann1.2T9F1Z Arachis hypogaea HOM05D007149 ORTHO05D008956 2.6e-25 118.6 76 75.0
arahy.Tifrunner.gnm1.ann1.HVR4ZG Arachis hypogaea HOM05D007149 ORTHO05D008956 2.6e-25 118.6 76 75.0
Haze_14138 Corylus avellana HOM05D007149 ORTHO05D008956 4.4e-25 117.9 67 83.6
SalBow3G3356 Salvia bowleyana HOM05D007149 ORTHO05D008956 1.3e-24 116.3 66 83.3
TPR.G32450 Trifolium pratense HOM05D007149 ORTHO05D008956 1.3e-24 116.3 138 49.3
SalBow6G3599 Salvia bowleyana HOM05D007149 ORTHO05D008956 1.7e-24 115.9 69 78.3
PGSC0003DMG400024179 Solanum tuberosum HOM05D007149 ORTHO05D008956 2.9e-24 115.2 75 73.3
ECA246G4376 Erigeron canadensis HOM05D007149 ORTHO05D008956 3.7e-24 114.8 65 81.5
Nitab4.5_0001569g0020 Nicotiana tabacum HOM05D007149 ORTHO05D008956 3.7e-24 114.8 69 73.9
CDE05G2183 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 4.1e-23 111.3 66 80.3
AUR62014527 Chenopodium quinoa HOM05D007149 ORTHO05D008956 1.2e-22 109.8 68 73.5
HPP92_011107 Vanilla planifolia HOM05D007149 ORTHO05D008956 1.2e-22 109.8 70 71.4
Prupe.3G238900 Prunus persica HOM05D007149 ORTHO05D008956 2.1e-22 109.0 68 73.5
SHI30170 Sapria himalayana HOM05D007149 ORTHO05D008956 2.1e-22 109.0 65 76.9
AagrBONN_evm.TU.Sc2ySwM_228.1220 Anthoceros agrestis HOM05D007149 ORTHO05D008956 2.7e-22 108.6 79 60.8
Sopen02g014160 Solanum pennellii HOM05D007149 ORTHO05D008956 3.0e-21 105.1 62 75.8
ClCG11G005400 Citrullus lanatus HOM05D007149 ORTHO05D008956 3.9e-21 104.8 64 78.1
Pp3c20_17910 Physcomitrium patens HOM05D007149 ORTHO05D008956 6.6e-21 104.0 77 62.3
SMO356G0237 Selaginella moellendorffii HOM05D007149 ORTHO05D008956 3.3e-20 101.7 77 62.3
Mapoly0073s0075 Marchantia polymorpha HOM05D007149 ORTHO05D008956 4.0e-18 94.7 65 64.6
SGA_v2.0_scaffold33G13472 Striga asiatica HOM05D007149 ORTHO05D008956 6.6e-13 77.4 45 75.6
RcHm_v2.0_Chr2g0163021 Rosa chinensis HOM05D007149 ORTHO05D008956 3.3e-12 75.1 65 58.5
Nitab4.5_0002288g0070 Nicotiana tabacum HOM05D007149 ORTHO05D008956 1.4e-10 69.7 86 47.7
MCO15G246 Micromonas commoda HOM05D007149 ORTHO05D008956 5.2e-10 67.8 71 43.7
PRCOL_00003753 Prasinoderma coloniale HOM05D007149 ORTHO05D008956 8.9e-10 67.0 70 50.0


User provided reference genes

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