Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G26900 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 1.5e-19 98.6 52 100.0
AT5G16023 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.4e-17 92.0 52 92.3
Carub.0006s1421 Capsella rubella HOM05D004326 ORTHO05D004570 5.9e-16 86.7 52 92.3
CARHR197290 Cardamine hirsuta HOM05D004326 ORTHO05D004570 1.0e-15 85.9 52 88.5
C02p08120 Brassica napus HOM05D004326 ORTHO05D004570 3.2e-14 80.9 52 86.5
A10p23030 Brassica napus HOM05D004326 ORTHO05D004570 4.2e-14 80.5 52 84.6
BolC9t58947H Brassica oleracea HOM05D004326 ORTHO05D004570 4.2e-14 80.5 52 84.6
BraA10t44372Z Brassica rapa HOM05D004326 ORTHO05D004570 4.2e-14 80.5 52 84.6
BolC2t06734H Brassica oleracea HOM05D004326 ORTHO05D004570 7.2e-14 79.7 52 84.6
A02p03350 Brassica napus HOM05D004326 ORTHO05D004570 1.2e-13 79.0 52 84.6
BraA02t05306Z Brassica rapa HOM05D004326 ORTHO05D004570 1.2e-13 79.0 52 84.6
A03p07530 Brassica napus HOM05D004326 ORTHO05D004570 3.6e-13 77.4 52 82.7
BraA03t10081Z Brassica rapa HOM05D004326 ORTHO05D004570 3.6e-13 77.4 52 82.7
Thhalv10015386m.g Eutrema salsugineum HOM05D004326 ORTHO05D004570 6.1e-13 76.6 52 78.8
C03p08740 Brassica napus HOM05D004326 ORTHO05D004570 1.0e-12 75.9 45 88.9
BolC3t13372H Brassica oleracea HOM05D004326 ORTHO05D004570 1.0e-12 75.9 45 88.9
AT3G02493 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.8e-09 65.1 46 71.7
THA.LOC109116985 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 2.4e-09 64.7 40 80.0
THA.LOC109117262 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 3.1e-09 64.3 45 75.6
THA.LOC109116378 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 7.0e-09 63.2 40 80.0
AL3G11830 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 1.2e-08 62.4 52 71.2
A03p32970 Brassica napus HOM05D004326 ORTHO05D004570 1.2e-08 62.4 38 78.9
C03p40100 Brassica napus HOM05D004326 ORTHO05D004570 1.2e-08 62.4 38 78.9
BolC3t16276H Brassica oleracea HOM05D004326 ORTHO05D004570 1.2e-08 62.4 38 78.9
BraA03t12465Z Brassica rapa HOM05D004326 ORTHO05D004570 1.2e-08 62.4 38 78.9
CARHR076480 Cardamine hirsuta HOM05D004326 ORTHO05D004570 1.6e-08 62.0 46 69.6
Migut.K00857 Erythranthe guttata HOM05D004326 ORTHO05D004570 7.7e-08 59.7 36 77.8
THA.LOC109117071 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 7.7e-08 59.7 42 69.0
Glyma.18G280800 Glycine max HOM05D004326 ORTHO05D004570 1.0e-07 59.3 45 66.7
Potri.004G102950 Populus trichocarpa HOM05D004326 ORTHO05D004570 1.3e-07 58.9 46 63.0
Carub.0003s0160 Capsella rubella HOM05D004326 ORTHO05D004570 1.7e-07 58.5 47 70.2
Glyma.08G256500 Glycine max HOM05D004326 ORTHO05D004570 2.9e-07 57.8 45 66.7
Phvul.008G020301 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 2.9e-07 57.8 45 66.7
Solyc02g065570.1 Solanum lycopersicum HOM05D004326 ORTHO05D004570 2.9e-07 57.8 52 61.5
Thecc.04G138400 Theobroma cacao HOM05D004326 ORTHO05D004570 3.8e-07 57.4 48 60.4
Potri.017G112100 Populus trichocarpa HOM05D004326 ORTHO05D004570 5.0e-07 57.0 46 60.9
TWI56G0546 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 5.0e-07 57.0 47 59.6
CiPaw.03G059200 Carya illinoinensis HOM05D004326 ORTHO05D004570 6.5e-07 56.6 39 71.8
RcHm_v2.0_Chr2g0163211 Rosa chinensis HOM05D004326 ORTHO05D004570 6.5e-07 56.6 46 67.4
CAN.G93.32 Capsicum annuum HOM05D004326 ORTHO05D004570 8.5e-07 56.2 50 56.0
Duzib138G0964 Durio zibethinus HOM05D004326 ORTHO05D004570 8.5e-07 56.2 49 61.2
PGR042G3431 Punica granatum HOM05D004326 ORTHO05D004570 8.5e-07 56.2 58 56.9
Prupe.3G240100 Prunus persica HOM05D004326 ORTHO05D004570 1.1e-06 55.8 52 53.8
TWI12G0968 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 1.1e-06 55.8 52 59.6
CANSAT64G0444 Cannabis sativa HOM05D004326 ORTHO05D004570 1.5e-06 55.5 49 61.2
Carub.0002s1354 Capsella rubella HOM05D004326 ORTHO05D004570 1.5e-06 55.5 40 65.0
PSO478G3685 Papaver somniferum HOM05D004326 ORTHO05D004570 1.5e-06 55.5 48 60.4
Lalb_Chr17g0336511 Lupinus albus HOM05D004326 ORTHO05D004570 2.5e-06 54.7 45 62.2
AT1G67265 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 3.2e-06 54.3 40 62.5
MELO3C008521.2 Cucumis melo HOM05D004326 ORTHO05D004570 3.2e-06 54.3 51 60.8
Migut.H00527 Erythranthe guttata HOM05D004326 ORTHO05D004570 3.2e-06 54.3 52 57.7
FvH4_6g45391 Fragaria vesca HOM05D004326 ORTHO05D004570 3.2e-06 54.3 31 77.4
FAN14G2544 Fragaria x ananassa HOM05D004326 ORTHO05D004570 3.2e-06 54.3 31 77.4
FAN14G3188 Fragaria x ananassa HOM05D004326 ORTHO05D004570 3.2e-06 54.3 31 77.4
Gohir.A07G168701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 4.2e-06 53.9 53 54.7
Gohir.D07G179500 Gossypium hirsutum HOM05D004326 ORTHO05D004570 4.2e-06 53.9 53 54.7
Gorai.001G200500 Gossypium raimondii HOM05D004326 ORTHO05D004570 4.2e-06 53.9 53 54.7
Manes.02G066501 Manihot esculenta HOM05D004326 ORTHO05D004570 4.2e-06 53.9 45 60.0
PSO017G5195 Papaver somniferum HOM05D004326 ORTHO05D004570 4.2e-06 53.9 47 57.4
Manes.01G107900 Manihot esculenta HOM05D004326 ORTHO05D004570 5.5e-06 53.5 52 55.8
CAN.G497.3 Capsicum annuum HOM05D004326 ORTHO05D004570 7.2e-06 53.1 40 62.5
MD09G1083800 Malus domestica HOM05D004326 ORTHO05D004570 7.2e-06 53.1 49 57.1


User provided reference genes

Program Settings