Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 8.4e-183 643.7 349 100.0
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 8.4e-183 643.7 349 100.0
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 5.1e-172 607.8 349 94.6
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.6e-165 586.3 349 91.7
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 6.1e-165 584.3 349 91.4
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 8.2e-162 573.9 349 90.0
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.4e-161 573.2 349 89.7
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 1.6e-157 559.7 349 86.8
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.8e-153 546.2 349 86.5
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.3e-151 540.0 350 85.7
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.3e-151 540.0 350 85.7
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 2.2e-151 539.3 349 85.7
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 2.2e-151 539.3 352 86.1
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 6.5e-151 537.7 349 85.7
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 8.5e-151 537.3 349 85.1
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.4e-150 536.6 352 85.8
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 5.5e-150 534.6 352 85.5
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 4.7e-141 505.0 347 82.7
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 3.0e-140 502.3 349 80.2
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.6e-136 490.0 355 79.7
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 2.9e-106 389.4 349 63.3
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 6.4e-106 388.3 351 63.8
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.3e-103 380.6 350 63.1
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.7e-103 380.2 350 62.6
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 2.5e-102 376.3 352 63.1
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 5.6e-102 375.2 352 61.6
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 9.5e-102 374.4 352 61.6
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 2.1e-101 373.2 351 62.4
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 1.4e-100 370.5 352 63.6
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 2.3e-100 369.8 350 63.4
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 2.6e-99 366.3 352 63.1
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 5.8e-99 365.2 351 63.2
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 2.9e-98 362.8 350 63.1
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 8.3e-98 361.3 351 59.8
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 5.4e-97 358.6 352 61.6
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 9.2e-97 357.8 350 60.9
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 3.5e-96 355.9 349 61.3
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 3.5e-96 355.9 353 60.6
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 7.8e-96 354.8 352 61.6
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 1.3e-95 354.0 350 62.3
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 3.0e-95 352.8 350 60.3
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 6.6e-95 351.7 352 60.2
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.9e-94 350.1 354 60.2
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 1.9e-94 350.1 352 59.9
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 4.3e-94 349.0 364 60.7
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 7.3e-94 348.2 352 58.8
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 9.5e-94 347.8 357 58.0
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 4.7e-93 345.5 361 57.6
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 4.7e-93 345.5 352 61.1
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 4.7e-93 345.5 350 58.6
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 6.2e-93 345.1 351 61.3
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 1.4e-92 344.0 352 58.8
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.8e-92 343.6 351 59.8
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.8e-92 343.6 352 60.2
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 3.1e-92 342.8 359 57.9
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 6.8e-92 341.7 352 58.0
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.2e-91 340.9 351 59.5
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.2e-91 340.9 351 59.5
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 1.5e-91 340.5 351 60.1
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.3e-90 337.4 367 57.2
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 2.2e-90 336.7 352 58.5
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.9e-90 336.3 352 56.5
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.8e-90 335.9 352 56.2
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 6.4e-90 335.1 353 58.6
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 6.4e-90 335.1 420 51.2
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 1.4e-89 334.0 350 57.7
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 3.2e-89 332.8 354 58.5
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 4.1e-89 332.4 355 56.9
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 2.1e-88 330.1 353 58.9
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 4.6e-88 328.9 351 57.3
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 6.0e-88 328.6 352 56.0
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 3.9e-87 325.9 354 57.3
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 3.9e-87 325.9 365 55.3
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.5e-86 323.2 352 57.4
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 3.3e-86 322.8 344 57.8
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 2.1e-85 320.1 340 54.7
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 2.1e-85 320.1 356 57.6
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 2.8e-85 319.7 351 55.3
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.2e-85 318.5 352 57.1
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.2e-85 318.5 352 57.1
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.1e-84 317.8 353 56.1
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 6.9e-84 315.1 353 56.4
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 4.4e-83 312.4 300 62.0
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 5.8e-83 312.0 350 55.7
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 3.8e-82 309.3 351 57.3
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 5.4e-81 305.4 350 55.4
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 7.3e-78 295.0 352 54.3
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 7.3e-78 295.0 400 50.5
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.3e-77 294.3 335 54.9
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 8.1e-77 291.6 341 54.8
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 1.1e-76 291.2 373 53.4
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 4.0e-76 289.3 296 59.8
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 9.0e-76 288.1 356 52.0
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.6e-72 277.3 252 62.7
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 6.7e-71 271.9 351 48.1
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.6e-69 267.3 379 47.2
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 7.9e-64 248.4 353 49.0
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 3.9e-63 246.1 229 66.4
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 5.8e-59 232.3 352 48.3
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.0e-55 221.5 232 57.8
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 9.7e-54 214.9 334 43.4
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 2.2e-53 213.8 324 47.8
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 5.3e-52 209.1 201 61.2
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 3.6e-48 196.4 234 53.0
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 4.8e-45 186.0 113 86.7
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.1e-44 184.9 317 44.2
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 1.8e-44 184.1 178 62.9
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 5.3e-44 182.6 228 50.9
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 3.8e-42 176.4 194 54.6
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 1.6e-40 171.0 142 67.6
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 1.0e-39 168.3 101 89.1
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.3e-37 161.4 235 46.8
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 4.8e-37 159.5 237 45.1
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 4.1e-36 156.4 201 51.7
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 4.5e-35 152.9 299 37.8
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 8.5e-34 148.7 295 35.9
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 9.4e-33 145.2 154 57.1
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 8.0e-32 142.1 123 67.5
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 6.3e-29 132.5 122 68.9
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.4e-28 131.3 305 33.1
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.2e-27 128.3 229 42.4
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 1.5e-25 121.3 96 67.7
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 4.1e-20 103.2 369 28.2
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 7.7e-19 99.0 288 33.3
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 1.1e-17 95.1 92 56.5
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 5.5e-17 92.8 70 72.9
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 1.5e-14 84.7 77 63.6
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.3e-13 81.6 103 57.3
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 6.3e-13 79.3 237 32.1
BolC3t18733H Brassica oleracea HOM05D005714 ORTHO05D006812 2.0e-11 74.3 45 82.2
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 4.5e-11 73.2 108 40.7
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 2.1e-08 64.3 46 73.9
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 3.6e-08 63.5 88 52.3
Sopen03g009730 Solanum pennellii HOM05D005714 ORTHO05D006812 3.4e-06 57.0 90 42.2
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 7.5e-06 55.8 89 43.8


User provided reference genes

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