Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 5.7e-80 300.8 150 100.0
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 1.3e-76 289.7 148 95.9
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 5.8e-72 274.2 150 88.7
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 7.0e-70 267.3 146 87.7
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 4.6e-69 264.6 145 88.3
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 1.7e-68 262.7 145 85.5
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 2.3e-68 262.3 150 84.7
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 3.0e-68 261.9 145 85.5
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 8.6e-68 260.4 145 84.8
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 2.5e-67 258.8 145 84.1
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 7.3e-67 257.3 145 83.4
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 1.6e-66 256.1 146 82.2
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 3.6e-66 255.0 148 82.4
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 1.1e-65 253.4 146 80.8
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 3.1e-65 251.9 146 80.8
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 3.1e-65 251.9 146 80.8
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 6.8e-65 250.8 148 80.4
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 7.5e-64 247.3 146 78.8
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 4.9e-63 244.6 146 78.8
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 7.8e-61 237.3 145 80.0
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 3.6e-58 228.4 148 73.6
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 1.1e-57 226.9 148 74.3
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 1.8e-57 226.1 148 71.6
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 3.1e-57 225.3 148 71.6
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 3.1e-57 225.3 146 72.6
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 4.0e-57 224.9 146 72.6
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 5.2e-57 224.6 148 70.3
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 6.8e-57 224.2 148 72.3
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 1.2e-56 223.4 146 71.9
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 3.4e-56 221.9 148 71.6
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 3.4e-56 221.9 146 72.6
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 3.4e-56 221.9 144 72.2
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 3.4e-56 221.9 143 73.4
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 3.4e-56 221.9 148 70.9
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 4.4e-56 221.5 148 67.6
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 5.8e-56 221.1 146 71.9
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 7.6e-56 220.7 146 72.6
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 7.6e-56 220.7 148 72.3
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 7.6e-56 220.7 143 73.4
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 9.9e-56 220.3 142 72.5
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 9.9e-56 220.3 145 73.1
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 9.9e-56 220.3 148 70.3
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 9.9e-56 220.3 148 70.3
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 9.9e-56 220.3 142 72.5
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 9.9e-56 220.3 144 69.4
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 9.9e-56 220.3 146 69.9
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 1.3e-55 219.9 148 72.3
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 1.3e-55 219.9 148 70.3
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 1.3e-55 219.9 148 68.9
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 2.2e-55 219.2 143 70.6
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 2.2e-55 219.2 146 69.2
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 2.9e-55 218.8 146 72.6
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 2.9e-55 218.8 148 68.9
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 2.9e-55 218.8 148 68.9
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 2.9e-55 218.8 149 69.8
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 3.8e-55 218.4 146 70.5
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 4.9e-55 218.0 148 71.6
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 4.9e-55 218.0 149 70.5
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 4.9e-55 218.0 145 70.3
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 6.4e-55 217.6 143 69.9
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 6.4e-55 217.6 145 72.4
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 6.4e-55 217.6 146 69.9
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 6.4e-55 217.6 148 69.6
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 6.4e-55 217.6 146 68.5
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 8.4e-55 217.2 148 67.6
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 1.1e-54 216.9 146 70.5
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 1.1e-54 216.9 143 71.3
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 1.1e-54 216.9 148 68.2
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.1e-54 216.9 145 71.7
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 1.1e-54 216.9 148 69.6
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 1.1e-54 216.9 148 70.3
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 1.4e-54 216.5 144 68.8
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 1.9e-54 216.1 148 69.6
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 2.4e-54 215.7 146 69.2
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 3.2e-54 215.3 146 69.9
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 3.2e-54 215.3 148 68.9
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 4.1e-54 214.9 146 66.4
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 4.1e-54 214.9 147 68.0
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 4.1e-54 214.9 144 69.4
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 5.4e-54 214.5 144 70.1
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 9.2e-54 213.8 143 68.5
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 9.2e-54 213.8 148 69.6
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 9.2e-54 213.8 148 67.6
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 1.2e-53 213.4 146 65.1
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 1.6e-53 213.0 143 69.9
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 1.6e-53 213.0 146 69.2
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 2.7e-53 212.2 144 68.8
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 4.6e-53 211.5 147 66.7
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 4.6e-53 211.5 144 67.4
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 4.6e-53 211.5 148 68.9
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 6.0e-53 211.1 148 66.2
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 6.0e-53 211.1 144 69.4
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.0e-52 210.3 146 67.1
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 1.7e-52 209.5 146 67.8
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 5.1e-52 208.0 146 68.5
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 2.5e-51 205.7 146 65.1
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 2.5e-51 205.7 146 66.4
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 3.3e-51 205.3 148 65.5
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 2.8e-50 202.2 148 64.9
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 2.8e-50 202.2 138 69.6
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 8.1e-50 200.7 148 64.9
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.4e-49 199.9 148 64.2
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 1.8e-49 199.5 147 65.3
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 9.0e-49 197.2 138 68.8
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 1.2e-48 196.8 142 64.8
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 1.7e-47 193.0 146 61.0
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 2.2e-47 192.6 144 64.6
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 6.4e-47 191.0 146 61.6
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 6.4e-47 191.0 144 64.6
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 2.4e-46 189.1 144 59.0
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 2.7e-45 185.7 142 58.5
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.0e-44 183.7 145 59.3
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 3.6e-42 175.3 117 70.1
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 3.1e-41 172.2 117 71.8
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 4.5e-40 168.3 147 53.7
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.1e-38 163.7 146 48.6
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 1.8e-36 156.4 131 55.0
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 3.9e-36 155.2 148 49.3
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 1.5e-35 153.3 144 52.1
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 3.3e-35 152.1 117 61.5
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 4.3e-35 151.8 99 69.7
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.1e-33 147.1 145 49.7
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 6.9e-33 144.4 108 66.7
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 2.6e-32 142.5 143 49.0
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 9.9e-32 140.6 146 45.2
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 2.9e-31 139.0 131 55.0
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 9.3e-30 134.0 99 61.6
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 1.6e-29 133.3 141 48.9
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 1.5e-27 126.7 95 62.1
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 2.6e-24 115.9 148 40.5
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 5.5e-22 108.2 85 57.6
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 3.5e-21 105.5 146 39.7
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 3.0e-20 102.4 84 54.8
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 1.6e-18 96.7 75 58.7


User provided reference genes

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