Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 0.0e+00 2199.1 1224 100.0
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 0.0e+00 1937.2 1228 89.9
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 0.0e+00 1741.5 1232 75.6
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 0.0e+00 1671.4 1241 79.7
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 0.0e+00 1604.0 1241 72.0
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 0.0e+00 1603.2 1229 71.6
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 0.0e+00 1504.2 1234 69.0
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 0.0e+00 1406.3 1233 65.8
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 0.0e+00 1328.5 1235 63.6
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 0.0e+00 1327.4 1235 63.6
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 0.0e+00 1326.6 1235 63.6
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 0.0e+00 1222.6 1246 58.3
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 2.3e-307 1059.3 961 58.7
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 1.1e-248 864.4 1232 48.3
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 2.1e-228 797.0 1047 42.5
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 4.3e-226 789.3 1233 41.6
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 7.2e-221 771.9 1073 41.4
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 6.1e-220 768.8 1169 41.8
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 3.9e-219 766.1 1162 44.0
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 4.1e-216 756.1 1161 45.8
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 1.0e-214 751.5 1236 38.7
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 1.4e-211 741.1 1080 43.4
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 2.8e-201 706.8 1037 43.6
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 2.0e-199 700.7 1227 38.4
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 1.0e-198 698.4 1036 41.7
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 2.9e-198 696.8 1235 42.3
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 1.0e-195 688.3 962 42.7
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.0e-195 688.3 1235 40.3
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 4.0e-195 686.4 1002 39.7
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 1.7e-193 681.0 973 38.4
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.4e-187 661.4 1165 41.0
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 6.4e-185 652.5 1007 38.3
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 3.5e-183 646.7 1169 41.7
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 1.7e-182 644.4 1230 40.1
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 1.7e-182 644.4 1061 37.8
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 3.9e-182 643.3 984 41.5
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.0e-182 642.9 1238 38.9
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 4.0e-179 633.3 1013 39.7
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 7.5e-178 629.0 1249 39.2
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 9.8e-178 628.6 1080 41.9
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 2.3e-174 617.5 1221 36.9
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 9.5e-173 612.1 1163 40.0
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 1.4e-171 608.2 1017 37.7
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 3.4e-170 603.6 1174 38.8
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 4.4e-170 603.2 1181 38.8
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 9.8e-170 602.1 1191 40.3
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 2.2e-169 600.9 1164 39.8
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 1.1e-168 598.6 1167 35.2
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 7.1e-168 595.9 1167 40.7
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 1.7e-166 591.3 833 37.8
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 3.1e-163 580.5 1186 35.3
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 4.0e-163 580.1 1196 38.5
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 1.5e-162 578.2 1185 39.2
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 2.4e-160 570.9 1031 36.9
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 1.2e-159 568.5 1007 37.8
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 7.8e-159 565.8 1076 33.2
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 2.5e-157 560.8 1032 37.4
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 2.8e-156 557.4 1092 40.9
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 9.9e-154 548.9 953 38.7
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 1.3e-153 548.5 1051 36.3
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 8.4e-153 545.8 1201 37.6
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 3.2e-152 543.9 1174 36.2
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 3.0e-150 537.3 1215 33.7
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 5.8e-146 523.1 1237 36.0
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 1.9e-144 518.1 1077 40.7
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 1.9e-144 518.1 754 42.7
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 9.3e-144 515.8 978 36.1
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 9.3e-144 515.8 741 37.1
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 1.6e-143 515.0 727 37.3
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 2.7e-143 514.2 823 37.8
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 1.3e-142 511.9 1176 33.1
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 2.3e-142 511.1 799 35.5
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.8e-139 501.5 1159 33.1
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 5.3e-139 500.0 767 35.6
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 2.0e-138 498.0 710 37.0
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 5.8e-138 496.5 956 35.0
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 3.9e-134 483.8 1043 30.9
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 6.2e-132 476.5 996 33.7
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 3.8e-129 467.2 697 40.5
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 1.2e-122 445.7 754 34.0
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 8.4e-121 439.5 1058 33.1
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 1.6e-116 425.2 878 31.4
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 6.1e-111 406.8 734 37.5
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 2.4e-107 394.8 730 36.8
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.1e-101 375.9 754 35.7
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 7.0e-99 366.7 638 31.0
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 4.0e-94 350.9 1164 32.9
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 1.7e-92 345.5 776 34.9
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 4.1e-91 340.9 938 27.6
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 1.2e-90 339.3 835 37.4
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-74 286.2 612 36.4
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 2.7e-66 258.5 335 47.8
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 1.0e-62 246.5 401 52.4
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.6e-55 222.6 328 43.9
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 9.2e-51 206.8 968 25.0
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 1.3e-49 203.0 194 51.0
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 9.2e-43 180.3 215 42.8
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-42 179.9 247 39.7
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 6.6e-41 174.1 209 45.0
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 4.3e-40 171.4 437 29.3
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 2.2e-36 159.1 506 26.7
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 8.4e-36 157.1 411 28.5
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 1.6e-31 142.9 256 34.4
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 4.2e-27 128.3 181 37.6
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 2.7e-26 125.6 331 30.5
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 3.5e-26 125.2 248 31.5
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.4e-22 112.5 188 39.4
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 3.1e-22 112.1 188 39.4
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 2.2e-20 105.9 219 32.0
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 2.5e-16 92.4 515 28.5
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 4.3e-16 91.7 107 46.7
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 1.5e-13 83.2 298 41.6
Duzib093G0470 Durio zibethinus HOM05D008684 ORTHO05D010796 2.5e-11 75.9 366 22.1
BcaB01g04883 Brassica carinata HOM05D007340 ORTHO05D008979 5.5e-11 74.7 206 27.2
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 9.3e-11 73.9 91 38.5
Thecc.02G332900 Theobroma cacao HOM05D005622 ORTHO05D002854 1.6e-10 73.2 320 22.5
Medtr5g044120 Medicago truncatula HOM05D005622 ORTHO05D002854 3.5e-10 72.0 319 20.7
Sabra16G0092400 Salix brachista HOM05D005622 ORTHO05D002854 4.6e-10 71.6 370 22.2
Duzib168G0340 Durio zibethinus HOM05D000001 ORTHO05D013582 6.0e-10 71.2 457 21.7
TAR629G1135 Trochodendron aralioides HOM05D005622 ORTHO05D002854 6.0e-10 71.2 365 23.8
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 7.9e-10 70.9 121 36.4
CAN.G354.69 Capsicum annuum HOM05D007390 ORTHO05D009114 1.3e-09 70.1 332 23.2
Cpa.g.sc108.57 Carica papaya HOM05D007358 ORTHO05D009117 2.3e-09 69.3 151 28.5
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 3.9e-09 68.6 237 21.9
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 3.9e-09 68.6 248 24.2
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 8.7e-09 67.4 406 22.7
Lsat_1_v5_gn_2_69281 Lactuca sativa HOM05D006218 ORTHO05D007338 1.1e-08 67.0 399 21.6
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 1.1e-08 67.0 209 24.4
Potri.016G086100 Populus trichocarpa HOM05D005622 ORTHO05D002854 1.1e-08 67.0 350 22.0
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 3.3e-08 65.5 389 23.1
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 3.3e-08 65.5 389 23.1
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 4.3e-08 65.1 205 24.4
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 4.3e-08 65.1 387 23.0
ECA240G1124 Erigeron canadensis HOM05D005398 ORTHO05D000476 4.3e-08 65.1 728 18.8
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 4.3e-08 65.1 83 38.6
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 4.3e-08 65.1 190 28.9
Psat2g129840 Pisum sativum HOM05D005622 ORTHO05D002854 5.7e-08 64.7 320 20.6
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 5.7e-08 64.7 409 23.5
AT1G68980 Arabidopsis thaliana HOM05D005706 ORTHO05D007474 7.4e-08 64.3 410 21.2
SHI08443 Sapria himalayana HOM05D005622 ORTHO05D002854 9.7e-08 63.9 322 20.2
Sed0002743 Sechium edule HOM05D000104 ORTHO05D009920 9.7e-08 63.9 302 22.5
TAR560G0001 Trochodendron aralioides HOM05D000001 ORTHO05D013582 9.7e-08 63.9 254 23.2
Aqoxy3G03617 Aquilegia oxysepala HOM05D005622 ORTHO05D002854 2.1e-07 62.8 365 21.1
TAR623G0872 Trochodendron aralioides HOM05D000001 ORTHO05D013582 2.8e-07 62.4 236 22.5
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 2.8e-07 62.4 234 23.5
Gohir.A09G173100 Gossypium hirsutum HOM05D005622 ORTHO05D002854 3.7e-07 62.0 336 20.5
MBI05_g36420_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 8.2e-07 60.8 61 47.5
BcaB08g36875 Brassica carinata HOM05D002460 ORTHO05D002716 1.4e-06 60.1 472 19.7
ECA247G3408 Erigeron canadensis HOM05D006218 ORTHO05D007338 1.4e-06 60.1 193 22.3
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 1.4e-06 60.1 225 21.3
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 1.8e-06 59.7 138 26.8
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.9e-06 57.8 526 19.4
CAN.G1248.21 Capsicum annuum HOM05D007830 ORTHO05D009947 9.0e-06 57.4 127 30.7
Thhalv10027688m.g Eutrema salsugineum HOM05D007358 ORTHO05D009117 9.0e-06 57.4 152 29.6
VMungo1215G2887 Vigna mungo HOM05D000879 ORTHO05D002043 9.0e-06 57.4 205 26.3


User provided reference genes

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