Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G25790 Arabidopsis lyrata HOM05D007562 ORTHO05D009721 0.0e+00 1182.2 630 100.0
Carub.0006s1315 Capsella rubella HOM05D007562 ORTHO05D009721 1.6e-285 985.7 670 81.5
Thhalv10015291m.g Eutrema salsugineum HOM05D007562 ORTHO05D009721 1.9e-265 919.1 674 76.4
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 2.2e-258 895.6 672 76.5
AT5G14990 Arabidopsis thaliana HOM05D007562 ORTHO05D009721 2.9e-258 895.2 573 85.7
C02p07440 Brassica napus HOM05D007562 ORTHO05D009721 2.5e-233 812.4 696 67.0
Sp6g29050 Schrenkiella parvula HOM05D007562 ORTHO05D009721 2.2e-229 799.3 570 77.5
BolC2t06675H Brassica oleracea HOM05D000286 ORTHO05D009721 2.4e-228 795.8 649 69.6
BcaC03g13438 Brassica carinata HOM05D007562 ORTHO05D009721 5.3e-228 794.7 691 67.0
BraA02t05255Z Brassica rapa HOM05D007562 ORTHO05D009721 5.9e-219 764.6 823 57.4
A02p02820 Brassica napus HOM05D007562 ORTHO05D009721 1.9e-217 759.6 821 57.2
Aa31LG11G14520 Aethionema arabicum HOM05D007562 ORTHO05D009721 5.5e-148 528.9 938 41.3
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 5.0e-77 293.1 519 41.2
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 8.9e-74 282.3 691 34.2
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 1.5e-73 281.6 745 33.8
TWI63G1657 Tripterygium wilfordii HOM05D007562 ORTHO05D009721 1.6e-70 271.6 541 37.5
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 2.5e-68 264.2 547 38.8
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 9.5e-68 262.3 608 36.2
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 4.7e-67 260.0 528 37.1
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 5.8e-65 253.1 567 35.1
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 1.1e-63 248.8 810 31.0
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 9.2e-63 245.7 821 29.8
Potri.010G222200 Populus trichocarpa HOM05D007562 ORTHO05D009721 1.6e-62 245.0 516 37.4
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 4.6e-62 243.4 574 34.1
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 4.6e-62 243.4 522 36.6
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 1.3e-61 241.9 670 34.9
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 9.5e-60 235.7 803 29.5
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 1.2e-57 228.8 537 33.7
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 2.0e-57 228.0 554 35.7
COL.COLO4_23667 Corchorus olitorius HOM05D007562 ORTHO05D009721 1.7e-56 224.9 507 35.3
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.2e-56 224.6 520 35.0
Manes.07G100520 Manihot esculenta HOM05D007562 ORTHO05D009721 3.8e-56 223.8 663 31.2
Ciclev10033636m.g Citrus clementina HOM05D007562 ORTHO05D009721 1.6e-54 218.4 511 35.2
MELO3C012431.2 Cucumis melo HOM05D007562 ORTHO05D009721 6.0e-54 216.5 658 29.9
Ciclev10033468m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.3e-53 214.5 507 34.9
Ciclev10033649m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.3e-53 214.5 558 33.2
Cpa.g.sc53.80 Carica papaya HOM05D007562 ORTHO05D009721 6.6e-53 213.0 368 41.8
Eucgr.G02827 Eucalyptus grandis HOM05D007562 ORTHO05D009721 1.1e-52 212.2 570 32.6
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 5.6e-52 209.9 498 35.3
FvH4_7g19620 Fragaria vesca HOM05D007562 ORTHO05D009721 1.6e-51 208.4 556 32.9
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 1.6e-51 208.4 498 35.1
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 2.1e-51 208.0 518 34.2
FAN01G2123 Fragaria x ananassa HOM05D007562 ORTHO05D009721 3.6e-51 207.2 536 33.8
FAN10G0414 Fragaria x ananassa HOM05D007562 ORTHO05D009721 3.6e-51 207.2 487 35.7
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 6.2e-51 206.5 434 37.1
Medtr6g060178 Medicago truncatula HOM05D007562 ORTHO05D009721 6.2e-51 206.5 596 31.4
FAN03G1079 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.1e-50 205.7 531 33.3
PGR142G4136 Punica granatum HOM05D007562 ORTHO05D009721 1.1e-50 205.7 710 28.7
GSVIVG01016281001 Vitis vinifera HOM05D007562 ORTHO05D009721 1.8e-50 204.9 551 33.9
TPR.G20136 Trifolium pratense HOM05D007562 ORTHO05D009721 2.4e-50 204.5 555 34.2
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 2.4e-50 204.5 650 30.8
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 3.1e-50 204.1 537 33.3
Ciclev10033616m.g Citrus clementina HOM05D007562 ORTHO05D009721 7.6e-49 199.5 582 31.8
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 7.6e-49 199.5 551 34.3
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 3.8e-48 197.2 519 33.1
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 2.4e-47 194.5 566 33.4
CsaV3_5G036330 Cucumis sativus L. HOM05D007562 ORTHO05D009721 8.7e-45 186.0 609 31.9
CSS0037048 Camellia sinensis var. sinensis HOM05D007562 ORTHO05D009721 5.3e-42 176.8 531 29.4
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 1.2e-41 175.6 673 27.2
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 1.3e-40 172.2 662 28.9
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 6.4e-40 169.9 613 28.4
Ciclev10033702m.g Citrus clementina HOM05D007562 ORTHO05D009721 3.2e-39 167.5 397 33.8
Sed0018277 Sechium edule HOM05D007562 ORTHO05D009721 3.5e-38 164.1 434 33.2
Cc09_g02120 Coffea canephora HOM05D007562 ORTHO05D009721 4.3e-36 157.1 504 31.0
Nitab4.5_0010206g0020 Nicotiana tabacum HOM05D007562 ORTHO05D009721 2.4e-34 151.4 797 25.6
Nn4g24611 Nelumbo nucifera HOM05D007562 ORTHO05D009721 1.2e-33 149.1 372 33.6
Peaxi162Scf00072g00627 Petunia axillaris HOM05D007562 ORTHO05D009721 2.9e-32 144.4 667 26.4
Nitab4.5_0000575g0170 Nicotiana tabacum HOM05D007562 ORTHO05D009721 5.5e-31 140.2 655 26.6
Oeu043937.1 Olea europaea HOM05D007562 ORTHO05D009721 1.6e-30 138.7 589 27.2
Solyc04g049440.2 Solanum lycopersicum HOM05D007562 ORTHO05D009721 1.3e-29 135.6 665 26.8
PSO063G7346 Papaver somniferum HOM05D007562 ORTHO05D009721 3.9e-29 134.0 353 32.9
DCAR_004783 Daucus carota HOM05D007562 ORTHO05D009721 7.4e-28 129.8 508 27.4
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 1.6e-27 128.6 447 28.6
PSO339G1903 Papaver somniferum HOM05D007562 ORTHO05D009721 1.1e-26 125.9 353 32.0
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 2.9e-24 117.9 397 29.7
FAN06G2349 Fragaria x ananassa HOM05D000286 ORTHO05D009721 3.8e-24 117.5 437 27.2
Cc09_g02140 Coffea canephora HOM05D007562 ORTHO05D009721 1.1e-23 115.9 208 38.5
SGA_v2.0_scaffold71G24023 Striga asiatica HOM05D007562 ORTHO05D009721 1.1e-20 105.9 805 23.7
Migut.F01779 Erythranthe guttata HOM05D007562 ORTHO05D009721 1.1e-18 99.4 605 24.8
CDE08G0023 Ceratophyllum demersum HOM05D007562 ORTHO05D009721 6.9e-18 96.7 391 26.1
Psat1g112000 Pisum sativum HOM05D007562 ORTHO05D009721 2.5e-15 88.2 119 42.0
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 6.7e-13 80.1 139 34.5
Ciclev10034000m.g Citrus clementina HOM05D007562 ORTHO05D004736 1.1e-12 79.3 92 46.7
ECA233G5285 Erigeron canadensis HOM05D007562 ORTHO05D009721 1.3e-11 75.9 225 31.6
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 1.6e-11 75.5 231 26.0
FAN06G4675 Fragaria x ananassa HOM05D007562 ORTHO05D009721 1.6e-11 75.5 393 25.4
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 2.2e-11 75.1 228 26.3
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 2.2e-11 75.1 228 26.3
Zm00001eb077110 Zea mays HOM05D007562 ORTHO05D009721 2.2e-11 75.1 274 26.3
SalBow3G0440 Salvia bowleyana HOM05D007562 ORTHO05D009721 2.8e-11 74.7 584 22.9
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 3.7e-11 74.3 231 26.8
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 3.7e-11 74.3 231 26.8
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 1.1e-10 72.8 84 45.2
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 4.1e-10 70.9 111 36.0
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 5.3e-10 70.5 106 36.8
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 5.3e-10 70.5 149 30.2
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 1.2e-09 69.3 160 31.2
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 1.2e-09 69.3 106 35.8
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 2.0e-09 68.6 218 26.6
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 2.6e-09 68.2 141 32.6
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 3.4e-09 67.8 143 33.6
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 7.7e-09 66.6 589 21.2
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 1.0e-08 66.2 143 30.8
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 1.0e-08 66.2 107 35.5
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.3e-08 65.9 150 30.0
Sed0017940 Sechium edule HOM05D007562 ORTHO05D009721 1.7e-08 65.5 97 38.1
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.7e-08 65.5 108 37.0
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 2.2e-08 65.1 115 33.0
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 2.9e-08 64.7 216 25.9
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 5.0e-08 63.9 158 33.5
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 6.5e-08 63.5 231 29.0
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 6.5e-08 63.5 152 29.6
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 8.5e-08 63.2 149 29.5
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.1e-07 62.8 217 25.3
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.1e-07 62.8 153 30.7
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 1.4e-07 62.4 151 31.8
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 1.4e-07 62.4 172 29.1
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 1.9e-07 62.0 107 34.6
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 1.9e-07 62.0 224 26.8
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 1.9e-07 62.0 300 25.0
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 2.5e-07 61.6 173 28.3
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 3.2e-07 61.2 165 27.9
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 3.2e-07 61.2 166 29.5
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 4.2e-07 60.8 248 23.0
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 4.2e-07 60.8 204 25.5
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 4.2e-07 60.8 145 31.7
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 4.2e-07 60.8 146 27.4
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 4.2e-07 60.8 171 29.2
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 5.5e-07 60.5 232 26.3
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 5.5e-07 60.5 157 28.0
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 7.2e-07 60.1 167 27.5
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 7.2e-07 60.1 229 23.6
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 7.2e-07 60.1 168 29.8
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 1.2e-06 59.3 178 32.0
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 1.2e-06 59.3 291 24.4
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 1.2e-06 59.3 107 32.7
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 1.2e-06 59.3 766 21.9
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 1.6e-06 58.9 229 26.6
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 1.6e-06 58.9 373 25.2
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 2.1e-06 58.5 208 26.0
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 2.1e-06 58.5 173 28.3
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 2.7e-06 58.2 202 26.2
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 2.7e-06 58.2 148 28.4
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 2.7e-06 58.2 191 26.7
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 3.6e-06 57.8 106 34.0
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 3.6e-06 57.8 213 26.3
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 4.6e-06 57.4 100 36.0
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 4.6e-06 57.4 209 28.7
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 4.6e-06 57.4 342 21.1
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 6.1e-06 57.0 108 32.4
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 6.1e-06 57.0 108 32.4
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 7.9e-06 56.6 106 32.1
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 7.9e-06 56.6 149 28.2
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 7.9e-06 56.6 170 27.1


User provided reference genes

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