Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 2.5e-96 355.5 187 100.0
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 4.7e-63 245.0 137 94.2
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 6.7e-62 241.1 137 92.7
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 7.2e-56 221.1 137 84.7
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 5.7e-53 211.5 140 81.4
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 1.3e-52 210.3 138 81.2
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.4e-51 206.8 144 79.2
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.8e-51 206.5 144 78.5
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 1.8e-51 206.5 144 78.5
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 2.0e-50 203.0 139 80.6
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 4.2e-48 195.3 141 78.0
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 2.1e-47 193.0 143 77.6
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 2.3e-46 189.5 140 76.4
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 2.4e-43 179.5 144 72.2
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.2e-42 177.2 142 75.4
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 1.2e-39 167.2 162 59.3
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 4.0e-38 162.2 143 63.6
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 3.4e-37 159.1 144 66.7
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 3.4e-37 159.1 144 66.7
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 3.4e-37 159.1 144 66.7
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 1.1e-19 100.9 179 42.5
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 6.0e-18 95.1 146 42.5
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.3e-17 94.0 146 41.8
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 3.9e-17 92.4 139 43.2
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 6.6e-17 91.7 124 43.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 1.9e-16 90.1 98 51.0
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 1.9e-16 90.1 64 68.8
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 5.6e-16 88.6 73 63.0
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 5.6e-16 88.6 147 41.5
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 7.3e-16 88.2 65 70.8
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.6e-15 87.0 143 42.7
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.8e-15 86.3 110 44.5
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 3.6e-15 85.9 162 38.3
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.6e-15 85.9 68 61.8
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 6.2e-15 85.1 61 65.6
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 6.2e-15 85.1 155 39.4
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 8.1e-15 84.7 91 53.8
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 1.1e-14 84.3 55 70.9
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 1.1e-14 84.3 139 42.4
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 1.1e-14 84.3 109 45.0
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.1e-14 84.3 109 45.0
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 1.1e-14 84.3 168 40.5
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 1.4e-14 84.0 173 39.9
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.4e-14 84.0 63 63.5
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 1.8e-14 83.6 180 38.9
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 2.3e-14 83.2 152 40.1
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 3.1e-14 82.8 57 70.2
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 3.1e-14 82.8 56 67.9
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 5.2e-14 82.0 163 39.9
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 5.2e-14 82.0 110 44.5
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 5.2e-14 82.0 164 40.9
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.2e-14 82.0 63 63.5
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 6.8e-14 81.6 135 43.7
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 6.8e-14 81.6 150 44.0
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 6.8e-14 81.6 140 42.1
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 8.9e-14 81.3 56 69.6
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 8.9e-14 81.3 56 69.6
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 1.2e-13 80.9 166 35.5
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.2e-13 80.9 87 50.6
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.2e-13 80.9 173 37.0
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.2e-13 80.9 159 35.8
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.2e-13 80.9 65 61.5
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 1.5e-13 80.5 123 44.7
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.0e-13 80.1 76 55.3
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 2.0e-13 80.1 76 57.9
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 2.0e-13 80.1 79 54.4
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 2.0e-13 80.1 84 51.2
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 2.6e-13 79.7 163 35.6
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 3.4e-13 79.3 139 38.8
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 4.4e-13 79.0 157 38.2
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 4.4e-13 79.0 91 49.5
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 4.4e-13 79.0 141 41.1
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 4.4e-13 79.0 56 71.4
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.8e-13 78.6 63 60.3
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 7.6e-13 78.2 169 40.8
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 7.6e-13 78.2 140 39.3
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 9.9e-13 77.8 58 65.5
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 9.9e-13 77.8 78 53.8
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 9.9e-13 77.8 74 55.4
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 9.9e-13 77.8 146 37.7
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.3e-12 77.4 57 63.2
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 1.3e-12 77.4 58 67.2
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 1.7e-12 77.0 60 60.0
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.2e-12 76.6 56 62.5
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 2.9e-12 76.3 145 36.6
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.9e-12 76.3 169 38.5
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 3.7e-12 75.9 159 37.7
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 4.9e-12 75.5 145 38.6
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 6.4e-12 75.1 154 40.3
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 1.1e-11 74.3 56 60.7
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.1e-11 74.3 114 41.2
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.9e-11 73.6 177 37.3
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.4e-11 73.2 147 41.5
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 3.2e-11 72.8 79 49.4
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 3.2e-11 72.8 56 58.9
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 3.2e-11 72.8 75 50.7
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 4.1e-11 72.4 165 35.2
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 4.1e-11 72.4 144 35.4
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 5.4e-11 72.0 165 36.4
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 7.1e-11 71.6 171 35.1
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 7.1e-11 71.6 166 34.9
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 7.1e-11 71.6 74 51.4
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 9.2e-11 71.2 167 37.1
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-10 70.5 40 90.0
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 5.1e-09 65.5 155 36.1
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.6e-09 64.7 155 36.8
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.5e-08 63.9 106 40.6
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 1.9e-08 63.5 63 47.6
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.5e-08 63.2 69 50.7
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 3.3e-08 62.8 87 48.3
Gorai.009G308300 Gossypium raimondii HOM05D001962 ORTHO05D019237 3.6e-07 59.3 161 36.0
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 6.2e-07 58.5 118 37.3
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 8.1e-07 58.2 43 60.5
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 1.4e-06 57.4 143 34.3
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.8e-06 57.0 62 46.8
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 2.4e-06 56.6 41 58.5
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 4.0e-06 55.8 65 44.6
Gohir.D05G332600 Gossypium hirsutum HOM05D001962 ORTHO05D019237 8.9e-06 54.7 66 47.0


User provided reference genes

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