Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 8.8e-143 510.4 277 100.0
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.6e-139 499.6 277 97.8
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 7.7e-139 497.3 277 96.8
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 3.8e-138 495.0 277 95.7
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-134 483.4 277 93.5
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.2e-134 483.4 277 93.9
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.4e-134 481.9 277 93.5
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 9.8e-134 480.3 277 92.8
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 4.9e-133 478.0 277 92.1
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 8.3e-133 477.2 277 92.4
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-132 476.9 277 92.1
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.4e-132 475.7 277 91.7
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 2.9e-125 452.2 277 87.0
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 6.4e-125 451.1 277 87.4
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 6.4e-125 451.1 277 87.4
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 6.4e-125 451.1 277 87.4
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 3.2e-124 448.7 319 78.7
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.7e-123 445.7 281 85.8
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 8.6e-114 414.1 279 79.2
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 5.6e-113 411.4 276 78.3
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 7.3e-113 411.0 274 78.1
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.1e-111 407.1 274 76.6
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.4e-111 406.8 274 77.4
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.4e-111 406.8 274 78.1
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.8e-111 406.4 277 76.9
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 6.8e-111 404.4 274 77.0
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 8.9e-111 404.1 274 76.6
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 1.5e-110 403.3 277 76.2
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.5e-110 403.3 274 75.9
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 2.0e-110 402.9 276 76.1
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 2.6e-110 402.5 277 77.3
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 4.4e-110 401.7 277 75.5
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 5.8e-110 401.4 277 75.8
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 9.8e-110 400.6 274 75.9
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 77.4
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 2.2e-109 399.4 274 76.3
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 2.2e-109 399.4 273 76.2
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 2.9e-109 399.1 277 75.5
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 4.9e-109 398.3 277 75.5
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.1e-108 397.1 274 75.5
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.1e-108 397.1 277 75.5
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.9e-108 396.4 277 75.8
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.9e-108 396.4 274 75.9
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.9e-108 396.4 277 74.7
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.9e-108 396.4 274 75.2
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 2.4e-108 396.0 274 77.0
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 3.2e-108 395.6 274 75.2
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 4.1e-108 395.2 277 75.8
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 4.1e-108 395.2 277 74.4
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.4e-108 394.8 277 74.4
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.4e-108 394.8 277 74.4
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 5.4e-108 394.8 277 74.7
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 7.1e-108 394.4 277 74.4
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.6e-107 393.3 274 75.5
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 3.5e-107 392.1 277 75.1
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 4.6e-107 391.7 276 74.6
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 4.6e-107 391.7 277 74.0
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 7.8e-107 391.0 275 76.7
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 7.8e-107 391.0 276 75.0
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-106 390.2 277 73.6
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.7e-106 389.8 277 74.0
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 3.9e-106 388.7 277 73.6
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 5.1e-106 388.3 272 75.7
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 8.6e-106 387.5 274 73.0
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.1e-105 387.1 275 74.9
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.5e-105 386.7 272 75.0
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.5e-105 386.7 274 75.2
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 3.3e-105 385.6 273 77.3
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 4.3e-105 385.2 276 73.9
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 5.6e-105 384.8 274 74.5
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.3e-105 384.4 288 71.5
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 7.3e-105 384.4 272 74.3
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.6e-104 383.3 273 74.0
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 2.8e-104 382.5 277 72.9
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 3.6e-104 382.1 304 68.4
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 3.6e-104 382.1 275 73.5
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 4.7e-104 381.7 275 73.8
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 4.7e-104 381.7 275 73.8
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 8.1e-104 380.9 275 74.2
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.8e-103 379.8 278 71.9
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 2.3e-103 379.4 275 72.7
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 5.2e-103 378.3 273 74.0
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 8.9e-103 377.5 270 72.6
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 8.9e-103 377.5 273 72.9
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 8.9e-103 377.5 275 72.4
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.0e-102 376.3 277 72.2
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 4.4e-102 375.2 275 72.4
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 9.9e-102 374.0 276 72.1
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 9.9e-102 374.0 272 72.8
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 2.2e-101 372.9 272 72.8
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.2e-101 372.9 273 73.3
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 2.2e-101 372.9 272 72.8
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 2.9e-101 372.5 286 71.0
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.4e-100 369.4 293 68.6
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 2.4e-100 369.4 281 69.8
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-99 365.9 255 78.4
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 4.6e-99 365.2 273 72.5
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 5.1e-98 361.7 274 69.7
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.2e-96 357.1 291 65.6
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.2e-96 357.1 277 67.5
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.6e-96 355.5 277 70.4
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 6.2e-96 354.8 255 77.6
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 4.0e-95 352.1 282 70.6
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 5.2e-95 351.7 258 77.5
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 6.8e-95 351.3 282 70.9
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 6.8e-95 351.3 259 77.6
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 2.6e-94 349.4 269 69.9
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 4.4e-94 348.6 336 59.8
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 7.6e-94 347.8 267 69.7
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.3e-93 347.1 279 67.0
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.2e-93 346.3 273 69.2
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 2.9e-93 345.9 282 70.9
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.8e-93 345.5 272 67.6
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 4.9e-93 345.1 282 70.6
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 6.4e-93 344.7 272 67.6
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-91 340.1 282 70.2
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.7e-91 339.3 325 60.6
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 6.0e-91 338.2 367 55.3
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 3.9e-90 335.5 264 67.0
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.4e-87 327.0 267 65.9
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 2.0e-86 323.2 266 66.2
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 9.9e-86 320.9 266 63.9
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.9e-84 316.6 257 66.1
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 3.5e-83 312.4 274 58.0
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 6.0e-83 311.6 226 77.0
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 3.0e-82 309.3 275 57.8
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 4.8e-80 302.0 256 69.9
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 8.1e-80 301.2 211 74.4
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.1e-79 300.8 269 60.6
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-79 300.4 281 64.8
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.2e-78 297.4 267 59.9
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 9.9e-78 294.3 264 59.8
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.2e-76 288.9 264 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 7.1e-76 288.1 264 58.0
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.6e-75 285.4 486 41.4
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.3e-74 283.9 486 41.2
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 1.6e-72 276.9 267 56.2
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.4e-71 273.9 277 54.2
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 3.2e-68 262.7 252 61.5
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 3.9e-66 255.8 270 51.9
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 8.7e-66 254.6 267 58.8
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.4e-63 247.3 164 77.4
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.8e-63 246.9 258 57.4
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.5e-62 242.3 286 55.2
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 4.2e-60 235.7 267 52.4
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 4.8e-56 222.2 131 89.3
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 1.4e-52 210.7 140 75.7
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.0e-50 204.5 272 47.8
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 6.1e-43 178.7 131 73.3
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.0e-42 176.4 415 34.9
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.7e-40 170.6 138 63.0
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.4e-39 167.5 136 66.9
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.3e-39 165.6 148 62.8
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.8e-37 159.5 164 57.3
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 3.8e-37 159.5 216 46.3
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.2e-35 154.5 96 82.3
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.8e-34 150.6 101 78.2
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 6.7e-34 148.7 130 63.8
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 6.8e-26 122.1 95 70.5
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 2.0e-25 120.6 264 33.3
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 5.7e-25 119.0 141 48.9
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 9.8e-25 118.2 264 31.8
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.2e-24 117.1 139 48.9
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 6.3e-24 115.5 291 29.2
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 3.5e-22 109.8 111 59.5
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 8.5e-21 105.1 73 78.1
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 7.2e-20 102.1 150 45.3
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.7e-17 92.4 72 62.5
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 5.7e-17 92.4 72 62.5
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 1.3e-16 91.3 68 66.2
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-16 90.5 52 90.4
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-16 90.1 52 88.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.8e-16 90.1 52 88.5
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 3.7e-16 89.7 69 66.7
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 6.3e-16 89.0 52 88.5
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.3e-16 89.0 72 59.7
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.4e-15 87.8 72 59.7
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.4e-15 87.8 59 76.3
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 3.1e-15 86.7 52 86.5
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 7.0e-15 85.5 70 61.4
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-14 84.7 50 86.0
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 4.3e-12 76.3 53 69.8
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 7.5e-09 65.5 65 55.4
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-07 61.2 52 57.7
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 7.0e-07 58.9 40 75.0


User provided reference genes

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