Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G25570 Arabidopsis lyrata HOM05D007570 ORTHO05D009365 2.0e-218 763.5 941 100.0
AT5G14770 Arabidopsis thaliana HOM05D007570 ORTHO05D009365 7.3e-181 638.6 941 93.1
Thhalv10012597m.g Eutrema salsugineum HOM05D007570 ORTHO05D009365 5.4e-160 569.3 939 89.1
Sp6g29270 Schrenkiella parvula HOM05D007570 ORTHO05D009365 7.1e-160 568.9 940 89.7
Carub.0006s1294 Capsella rubella HOM05D007570 ORTHO05D009365 4.8e-156 556.2 941 87.2
BolC9t59076H Brassica oleracea HOM05D007570 ORTHO05D009365 9.3e-144 515.4 941 85.3
BraA10t44455Z Brassica rapa HOM05D007570 ORTHO05D009365 3.0e-142 510.4 941 86.5
BcaC04g19010 Brassica carinata HOM05D007570 ORTHO05D009365 6.7e-142 509.2 940 86.4
BcaB08g36948 Brassica carinata HOM05D007570 ORTHO05D009365 1.1e-141 508.4 941 85.3
C09p62380 Brassica napus HOM05D007570 ORTHO05D009365 6.2e-140 502.7 941 85.0
A10p23910 Brassica napus HOM05D007570 ORTHO05D009365 5.0e-137 493.0 941 85.9
CARHR198540 Cardamine hirsuta HOM05D007570 ORTHO05D009365 1.4e-102 378.6 939 80.8
Aa31LG11G14680 Aethionema arabicum HOM05D007570 ORTHO05D009365 4.3e-32 144.4 116 67.2
Aa31LG11G14690 Aethionema arabicum HOM05D007570 ORTHO05D009365 1.8e-30 139.0 129 76.7
Ciclev10030585m.g Citrus clementina HOM05D007570 ORTHO05D009365 2.9e-28 131.7 187 42.8
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 1.6e-26 125.9 174 42.5
Ca_18529_v3 Cicer arietinum L. HOM05D001301 ORTHO05D009365 2.1e-26 125.6 151 45.0
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 2.1e-26 125.6 198 43.4
Atru.chr6.18 Acer truncatum HOM05D007570 ORTHO05D009365 7.9e-26 123.6 171 41.5
Duzib106G0838 Durio zibethinus HOM05D007570 ORTHO05D009365 7.9e-26 123.6 181 43.1
Lj4g0005287 Lotus japonicus HOM05D007570 ORTHO05D009365 7.9e-26 123.6 165 43.6
VMungo0251G2923 Vigna mungo HOM05D007570 ORTHO05D009365 7.9e-26 123.6 165 44.8
Potri.019G043101 Populus trichocarpa HOM05D007570 ORTHO05D009365 1.0e-25 123.2 179 44.7
Psat7g112960 Pisum sativum HOM05D007570 ORTHO05D009365 1.3e-25 122.9 140 47.1
Medtr4g089005 Medicago truncatula HOM05D007570 ORTHO05D009365 2.3e-25 122.1 164 45.1
Glyma.07G194900 Glycine max HOM05D007570 ORTHO05D009365 3.9e-25 121.3 192 39.6
Gohir.A01G216000 Gossypium hirsutum HOM05D007570 ORTHO05D009365 3.9e-25 121.3 181 44.2
Gorai.002G249100 Gossypium raimondii HOM05D007570 ORTHO05D009365 3.9e-25 121.3 181 44.2
Phvul.002G227100 Phaseolus vulgaris HOM05D007570 ORTHO05D009365 5.1e-25 120.9 171 42.7
Sabra19G0053700 Salix brachista HOM05D007570 ORTHO05D009365 5.1e-25 120.9 191 42.9
Lalb_Chr16g0383631 Lupinus albus HOM05D007570 ORTHO05D009365 6.7e-25 120.6 140 47.1
MD11G1161200 Malus domestica HOM05D007570 ORTHO05D009365 6.7e-25 120.6 180 41.1
Gohir.D01G204800 Gossypium hirsutum HOM05D007570 ORTHO05D009365 1.9e-24 119.0 181 43.6
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 2.5e-24 118.6 195 38.5
Medtr8g064830 Medicago truncatula HOM05D007570 ORTHO05D009365 3.3e-24 118.2 140 45.7
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 4.3e-24 117.9 138 45.7
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 2.8e-23 115.2 174 54.6
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 6.3e-23 114.0 206 36.9
Manes.08G159400 Manihot esculenta HOM05D007570 ORTHO05D009365 8.2e-23 113.6 201 41.8
FvH4_7g02371 Fragaria vesca HOM05D007570 ORTHO05D009365 1.8e-22 112.5 141 44.0
FAN06G1073 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.8e-22 112.5 141 44.0
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 2.4e-22 112.1 166 40.4
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 2.4e-22 112.1 166 40.4
CSS0020002 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 9.0e-22 110.2 140 47.1
CSS0011257 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 2.0e-21 109.0 140 47.1
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 2.0e-21 109.0 168 43.5
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 2.6e-21 108.6 141 43.3
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 3.4e-21 108.2 141 43.3
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 7.6e-21 107.1 140 43.6
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 1.0e-20 106.7 271 31.0
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 1.0e-20 106.7 146 42.5
MD11G1161100 Malus domestica HOM05D007570 ORTHO05D009365 1.7e-20 105.9 175 57.1
FAN01G3111 Fragaria x ananassa HOM05D007570 ORTHO05D009365 6.5e-20 104.0 141 41.1
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 6.5e-20 104.0 140 43.6
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 1.1e-19 103.2 140 42.1
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 9.3e-19 100.1 282 33.0
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 2.1e-18 99.0 148 41.9
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 4.6e-18 97.8 385 64.4
Eucgr.A02378 Eucalyptus grandis HOM05D007570 ORTHO05D009365 6.1e-18 97.4 138 39.9
Migut.N02077 Erythranthe guttata HOM05D007570 ORTHO05D009365 1.3e-17 96.3 257 31.5
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 1.8e-17 95.9 146 34.2
MSTRG.27980 Avicennia marina HOM05D007570 ORTHO05D009365 1.9e-16 92.4 144 39.6
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 2.5e-16 92.0 143 40.6
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 2.5e-16 92.0 160 58.1
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 8.2e-15 87.0 240 31.7
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 1.8e-14 85.9 106 46.2
CAN.G665.19 Capsicum annuum HOM05D007570 ORTHO05D009365 2.4e-14 85.5 157 50.3
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 4.1e-14 84.7 196 33.2
Actinidia35565 Actinidia chinensis HOM05D007570 ORTHO05D009365 9.0e-14 83.6 104 46.2
PGSC0003DMG400024750 Solanum tuberosum HOM05D007570 ORTHO05D009365 2.6e-13 82.0 140 37.1
Hund19367 Selenicereus undatus HOM05D007570 ORTHO05D009365 2.2e-12 79.0 142 36.6
RcHm_v2.0_Chr1g0384651 Rosa chinensis HOM05D007570 ORTHO05D009365 2.9e-12 78.6 166 42.2
Nn1g08626 Nelumbo nucifera HOM05D007570 ORTHO05D009365 1.9e-11 75.9 164 31.1
HPP92_020822 Vanilla planifolia HOM05D007570 ORTHO05D009365 1.6e-10 72.8 140 32.9
SalBow3G3428 Salvia bowleyana HOM05D007570 ORTHO05D009365 2.1e-10 72.4 119 39.5
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 3.6e-10 71.6 104 40.4
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 1.4e-09 69.7 71 47.9
Cfa016108 Carpinus fangiana HOM05D007570 ORTHO05D009365 1.8e-09 69.3 71 47.9
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 1.5e-08 66.2 64 53.1
Oeu043366.2 Olea europaea HOM05D007570 ORTHO05D009365 4.3e-08 64.7 114 36.8
AUR62028022 Chenopodium quinoa HOM05D007570 ORTHO05D009365 5.7e-08 64.3 144 52.8
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 3.7e-07 61.6 98 35.7
MD00G1202400 Malus domestica HOM05D007570 ORTHO05D009365 4.8e-07 61.2 100 38.0
FAN10G3422 Fragaria x ananassa HOM05D007570 ORTHO05D009365 8.2e-07 60.5 56 50.0
TAR625G0236 Trochodendron aralioides HOM05D007570 ORTHO05D009365 1.1e-06 60.1 169 37.9
C02p07310 Brassica napus HOM05D007570 ORTHO05D033112 1.4e-06 59.7 46 67.4
BolC2t06662H Brassica oleracea HOM05D007570 ORTHO05D033112 1.4e-06 59.7 46 67.4
BolC2t06664H Brassica oleracea HOM05D007570 ORTHO05D033112 1.4e-06 59.7 46 67.4
FAN10G4006 Fragaria x ananassa HOM05D007570 ORTHO05D009365 2.4e-06 58.9 155 47.1
CANSAT78G2527 Cannabis sativa HOM05D007128 ORTHO05D009059 3.1e-06 58.5 143 27.3
EL10Ac2g03647 Beta vulgaris HOM05D007570 ORTHO05D009365 4.1e-06 58.2 106 37.7
Dinv22679 Davidia involucrata HOM05D007128 ORTHO05D009059 5.3e-06 57.8 136 31.6
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 9.1e-06 57.0 268 22.8
HanXRQChr16g0502661 Helianthus annuus HOM05D007128 ORTHO05D009059 9.1e-06 57.0 128 28.9


User provided reference genes

Program Settings