Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 2.2e-307 1058.1 537 100.0
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 2.0e-292 1008.4 547 94.5
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 1.3e-278 962.6 550 91.1
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.4e-261 906.0 546 87.5
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 6.9e-261 903.7 548 87.4
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 2.7e-257 891.7 542 85.8
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.2e-244 849.7 549 80.9
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 9.8e-207 723.8 499 75.8
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 1.4e-197 693.3 497 71.4
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 6.6e-195 684.5 569 65.0
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.5e-194 683.3 516 70.2
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 3.3e-194 682.2 559 66.0
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 4.3e-194 681.8 525 67.4
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 4.3e-194 681.8 562 65.5
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.2e-193 680.2 562 65.1
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 3.6e-193 678.7 566 65.4
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 4.7e-193 678.3 565 63.9
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.1e-192 677.2 567 64.4
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 3.1e-192 675.6 522 69.0
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 6.8e-192 674.5 522 68.8
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 1.2e-191 673.7 566 64.0
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.5e-191 673.3 562 63.7
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 2.0e-191 672.9 559 64.2
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.6e-191 672.5 564 64.4
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.4e-191 672.2 520 68.1
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 7.6e-191 671.0 502 69.3
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 9.9e-191 670.6 560 64.6
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.7e-190 669.8 565 63.5
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.7e-190 669.8 522 68.4
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.7e-190 669.8 498 68.5
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 2.2e-190 669.5 488 69.1
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.9e-190 669.1 565 63.5
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 2.9e-190 669.1 541 64.0
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 1.1e-189 667.2 556 63.7
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.9e-189 666.4 564 64.4
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 4.2e-189 665.2 561 64.9
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 4.2e-189 665.2 564 64.5
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 9.3e-189 664.1 546 65.9
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 1.6e-188 663.3 557 63.4
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.7e-187 659.8 557 63.4
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 2.3e-187 659.4 551 61.9
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.0e-187 659.1 503 68.6
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.9e-187 658.7 513 66.9
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 6.6e-187 657.9 539 64.2
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 6.6e-187 657.9 559 62.3
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 8.7e-187 657.5 540 63.0
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 1.1e-186 657.1 557 62.8
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 1.1e-186 657.1 505 66.9
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.5e-186 656.8 500 67.2
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.5e-186 656.0 503 68.0
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 2.5e-186 656.0 502 68.1
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 7.3e-186 654.4 555 62.9
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 1.3e-185 653.7 570 62.1
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 1.6e-185 653.3 553 62.9
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 2.1e-185 652.9 532 64.7
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 3.6e-185 652.1 567 62.6
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 4.8e-185 651.7 508 66.7
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 6.2e-185 651.4 566 62.7
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 1.4e-184 650.2 530 64.7
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 1.4e-184 650.2 556 61.5
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 1.4e-184 650.2 555 63.4
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.4e-184 649.4 565 62.7
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 2.4e-184 649.4 550 63.5
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 2.4e-184 649.4 509 66.6
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 6.9e-184 647.9 565 62.1
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 6.9e-184 647.9 501 67.1
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 9.0e-184 647.5 566 62.4
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 1.2e-183 647.1 554 61.9
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.0e-183 646.4 566 62.2
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 2.0e-183 646.4 529 63.5
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.6e-183 646.0 565 62.7
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 2.6e-183 646.0 550 63.1
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 3.4e-183 645.6 558 62.2
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 4.4e-183 645.2 503 67.4
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 5.8e-183 644.8 558 61.5
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 9.9e-183 644.0 540 64.1
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.3e-182 643.7 571 61.8
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 1.7e-182 643.3 488 67.2
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 1.4e-181 640.2 505 65.5
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.4e-181 640.2 502 66.5
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 9.3e-181 637.5 543 62.8
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 1.7e-179 633.3 566 60.1
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 2.3e-179 632.9 489 66.7
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 3.3e-178 629.0 550 60.9
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.6e-177 626.7 516 63.8
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 1.6e-177 626.7 563 59.7
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 2.8e-177 625.9 545 61.8
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 4.8e-177 625.2 574 58.9
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 2.4e-176 622.9 555 61.3
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 9.0e-176 620.9 525 63.8
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.2e-175 620.5 554 60.6
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.0e-175 619.8 556 60.4
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 4.5e-175 618.6 539 60.9
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 9.9e-175 617.5 429 73.4
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.3e-174 617.1 573 60.0
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 9.3e-173 610.9 497 63.4
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 6.0e-172 608.2 564 58.2
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.3e-171 607.1 497 63.2
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 1.3e-171 607.1 516 62.4
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 5.1e-171 605.1 569 58.2
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.8e-168 596.7 570 59.1
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 2.0e-167 593.2 490 62.0
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 3.4e-167 592.4 553 57.5
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 5.8e-167 591.7 549 58.7
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.0e-166 590.9 559 57.4
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.3e-166 590.5 559 58.9
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.4e-165 587.0 558 58.2
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 4.2e-165 585.5 539 58.3
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.2e-164 583.9 532 60.2
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 1.2e-164 583.9 553 59.3
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 3.7e-161 572.4 571 56.4
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 5.3e-160 568.5 495 59.8
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 6.9e-160 568.2 563 56.5
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 3.5e-156 555.8 566 53.9
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 6.1e-156 555.1 425 68.2
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 4.2e-149 532.3 343 75.5
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 3.6e-148 529.3 453 59.8
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 2.0e-146 523.5 515 54.8
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 5.1e-139 498.8 383 65.0
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.4e-136 490.7 505 57.0
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 4.4e-130 469.2 513 48.5
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 7.0e-128 461.8 510 47.8
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 4.8e-121 439.1 394 58.9
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 4.1e-120 436.0 511 48.5
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 2.1e-116 423.7 525 43.2
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 7.0e-112 408.7 258 74.8
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 3.7e-105 386.3 449 45.7
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 3.3e-101 373.2 543 44.6
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.3e-89 334.7 457 47.0
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 2.4e-88 330.5 500 42.0
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 5.4e-88 329.3 305 53.8
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 2.3e-86 323.9 467 39.2
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.3e-85 319.7 507 41.6
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 2.8e-84 317.0 244 70.1
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 3.6e-84 316.6 288 62.8
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 6.4e-73 279.3 369 46.6
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 1.2e-71 275.0 444 37.4
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 1.4e-67 261.5 322 41.0
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 5.5e-48 196.4 231 52.4
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 8.2e-44 182.6 507 31.2
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.5e-29 135.2 493 23.7
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 2.2e-28 131.3 144 55.6
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 1.9e-16 91.7 92 59.8
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 4.1e-11 73.9 85 51.8
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 8.0e-07 59.7 164 28.0
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 1.0e-06 59.3 164 28.0
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 5.2e-06 57.0 198 25.8
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 6.8e-06 56.6 164 28.0


User provided reference genes

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