Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 5.9e-93 344.4 194 100.0
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 9.4e-83 310.5 194 84.5
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 3.3e-80 302.0 194 88.7
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.0e-69 266.2 190 81.6
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 7.5e-64 247.7 191 81.2
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 5.4e-62 241.5 190 79.5
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 5.9e-61 238.0 189 76.7
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.9e-60 235.7 189 77.8
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 8.5e-60 234.2 190 70.5
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.1e-59 233.8 190 77.9
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-59 233.8 190 77.9
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.1e-59 233.8 190 77.9
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.8e-52 208.8 185 65.9
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.8e-52 208.8 185 65.9
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 5.6e-51 204.9 184 64.7
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 5.6e-51 204.9 184 64.7
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 3.6e-50 202.2 184 65.8
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 6.0e-29 131.7 198 44.4
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 7.8e-29 131.3 188 44.7
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 7.8e-29 131.3 204 44.6
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.0e-28 131.0 185 47.0
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.9e-28 129.0 198 43.9
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.6e-28 127.9 196 52.6
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.1e-27 127.5 194 41.2
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.1e-27 127.5 191 42.4
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.1e-27 127.5 191 44.0
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.1e-27 127.5 200 52.0
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.5e-27 126.3 196 51.5
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 2.5e-27 126.3 187 44.9
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 3.3e-27 125.9 189 43.9
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.3e-27 125.9 193 47.7
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 5.6e-27 125.2 195 43.1
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 7.3e-27 124.8 197 41.6
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.2e-26 124.0 208 50.0
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.2e-26 124.0 204 48.0
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.8e-26 122.9 190 44.7
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 2.8e-26 122.9 190 44.2
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.7e-26 122.1 192 43.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 8.1e-26 121.3 195 40.5
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 8.1e-26 121.3 186 43.0
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.1e-25 120.9 189 41.3
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.8e-25 120.2 196 43.4
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.8e-25 120.2 196 42.3
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 3.1e-25 119.4 191 43.5
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 5.2e-25 118.6 202 39.1
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 6.8e-25 118.2 194 42.3
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 8.9e-25 117.9 201 46.3
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.2e-24 117.5 190 41.1
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.5e-24 117.1 192 46.9
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 2.0e-24 116.7 192 41.7
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.0e-24 116.7 194 39.2
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-24 116.3 190 42.6
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.6e-24 116.3 193 42.0
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 2.6e-24 116.3 196 38.3
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.4e-24 115.9 187 40.6
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.4e-24 115.5 194 40.7
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 4.4e-24 115.5 190 38.4
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 4.4e-24 115.5 189 42.9
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 5.8e-24 115.2 211 39.3
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 7.6e-24 114.8 190 37.9
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 9.9e-24 114.4 195 40.5
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-23 114.0 195 40.5
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-23 114.0 195 40.5
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.3e-23 114.0 191 40.3
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.3e-23 114.0 190 37.9
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-23 113.6 191 40.8
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.7e-23 113.6 197 38.6
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.2e-23 113.2 195 40.5
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-23 113.2 195 40.5
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.2e-23 113.2 195 40.5
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.9e-23 112.8 187 39.6
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 3.8e-23 112.5 196 35.7
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 3.8e-23 112.5 191 39.8
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 4.9e-23 112.1 195 39.0
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 8.4e-23 111.3 194 39.2
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.1e-22 110.9 197 41.6
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.9e-22 110.2 194 40.2
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 3.2e-22 109.4 196 38.8
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 5.4e-22 108.6 197 38.1
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 9.2e-22 107.8 194 37.1
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 9.2e-22 107.8 202 40.1
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 9.2e-22 107.8 189 39.2
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 9.2e-22 107.8 191 43.5
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.6e-21 107.1 222 36.5
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.1e-21 106.7 192 38.0
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.1e-21 106.7 187 37.4
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 2.7e-21 106.3 193 43.0
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.5e-21 105.9 198 39.9
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 4.6e-21 105.5 192 38.0
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 4.6e-21 105.5 199 38.7
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 6.0e-21 105.1 195 39.5
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.0e-20 104.4 189 45.5
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.7e-20 103.6 198 43.4
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.3e-20 103.2 190 36.3
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 3.0e-20 102.8 194 35.1
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.0e-20 102.8 192 40.1
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 3.0e-20 102.8 181 42.5
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 3.0e-20 102.8 194 35.6
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 3.9e-20 102.4 195 38.5
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 6.6e-20 101.7 185 38.4
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 8.6e-20 101.3 205 43.4
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.5e-19 100.5 201 38.3
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.5e-19 100.5 192 35.4
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.9e-19 100.1 190 36.8
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.9e-19 100.1 193 45.1
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 4.3e-19 99.0 195 36.9
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 4.3e-19 99.0 193 43.5
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 5.6e-19 98.6 196 35.7
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 7.3e-19 98.2 194 36.6
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 7.3e-19 98.2 198 37.9
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 7.3e-19 98.2 191 38.2
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 9.6e-19 97.8 187 38.5
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.6e-18 97.1 202 45.5
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-18 96.7 169 37.9
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 2.1e-18 96.7 200 42.5
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 3.6e-18 95.9 189 36.5
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.6e-18 95.9 188 38.8
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.1e-17 94.4 186 39.2
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-17 94.4 193 36.8
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.4e-17 94.0 196 39.3
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.4e-17 94.0 196 39.3
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.4e-17 94.0 191 38.2
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.4e-17 94.0 195 34.9
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 2.4e-17 93.2 184 37.0
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.4e-17 93.2 231 32.0
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.0e-17 92.4 196 38.8
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.0e-17 92.4 193 43.5
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.0e-17 92.4 193 43.5
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 4.0e-17 92.4 194 34.0
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.2e-16 90.9 234 37.2
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.0e-16 90.1 181 39.8
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.4e-16 89.4 192 43.8
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.6e-16 88.2 182 36.8
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 7.6e-16 88.2 188 44.1
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-15 87.4 184 35.3
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.3e-15 87.4 194 35.1
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-15 86.7 169 36.1
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.2e-15 86.7 159 36.5
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.9e-15 86.3 195 33.3
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 2.9e-15 86.3 224 32.6
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.4e-15 85.1 193 42.0
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 6.4e-15 85.1 194 34.5
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 8.4e-15 84.7 185 41.1
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 8.4e-15 84.7 179 35.2
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-14 84.0 169 35.5
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.4e-14 84.0 67 67.2
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 2.4e-14 83.2 194 35.6
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 3.2e-14 82.8 198 32.8
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 3.2e-14 82.8 209 32.1
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 4.6e-13 79.0 70 61.4
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 6.0e-13 78.6 69 59.4
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 3.9e-12 75.9 174 36.8
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 6.6e-12 75.1 167 35.3
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.9e-11 73.6 175 38.9
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.5e-11 73.2 69 55.1
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.5e-11 73.2 160 35.6
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 2.5e-11 73.2 65 56.9
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 3.3e-11 72.8 188 37.2
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.3e-11 71.6 184 32.1
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.3e-10 70.9 209 29.2
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.6e-10 70.5 80 48.8
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.8e-10 69.7 195 29.7
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 2.8e-10 69.7 186 31.2
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.2e-10 68.6 190 30.5
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 8.1e-10 68.2 193 34.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 2.4e-09 66.6 197 31.5
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 5.3e-09 65.5 183 34.4
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 3.4e-08 62.8 156 32.7
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 7.6e-08 61.6 185 30.8
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.8e-07 59.3 85 38.8
Oeu062519.1 Olea europaea HOM05D051843 ORTHO05D004573 2.4e-06 56.6 169 32.5
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 3.2e-06 56.2 172 37.8


User provided reference genes

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