Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 0.0e+00 2346.6 1193 100.0
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 0.0e+00 1922.9 1227 83.1
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 0.0e+00 1734.9 1228 76.8
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 0.0e+00 1471.8 1212 69.1
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 0.0e+00 1449.9 1131 71.7
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 0.0e+00 1418.3 1214 68.0
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 0.0e+00 1200.7 1219 59.5
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 0.0e+00 1119.0 1203 58.9
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 0.0e+00 1090.1 1200 57.5
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 0.0e+00 1080.9 1205 57.3
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 4.7e-310 1068.1 1236 57.0
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 2.9e-307 1058.9 1204 56.6
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 1.9e-303 1046.2 1256 55.8
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 4.7e-302 1041.6 1232 56.3
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.1e-301 1040.4 1213 55.3
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 2.2e-291 1006.1 1235 54.2
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 6.0e-289 998.0 1234 54.0
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 3.1e-245 852.8 1370 43.7
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 4.7e-217 759.2 1345 41.3
BcaNung06336 Brassica carinata HOM05D010678 ORTHO05D006673 1.8e-123 448.4 491 55.8
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.3e-73 282.7 1277 28.4
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 7.1e-72 276.9 1371 28.1
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 5.6e-69 267.3 1241 28.4
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 6.8e-67 260.4 1240 27.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.3e-65 256.1 1368 27.4
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 9.3e-64 250.0 1265 27.7
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 2.1e-63 248.8 1338 27.0
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 5.1e-62 244.2 1350 28.0
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 8.7e-62 243.4 1312 28.0
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 8.7e-62 243.4 1154 28.8
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 4.8e-60 237.7 1311 27.6
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.6e-58 231.9 1382 26.8
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 7.6e-58 230.3 1382 26.8
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.7e-57 229.2 1285 27.5
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.4e-56 225.3 1315 26.7
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 1.7e-54 219.2 1363 26.5
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 3.0e-54 218.4 1330 26.7
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 3.0e-54 218.4 1211 28.2
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.5e-53 216.1 1360 26.7
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 4.3e-53 214.5 1303 26.1
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 2.9e-49 201.8 1221 27.1
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 2.9e-49 201.8 1207 26.3
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 3.2e-48 198.4 1366 25.9
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 2.7e-47 195.3 1179 26.0
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 2.7e-47 195.3 1219 26.3
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 1.3e-46 193.0 1158 27.0
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 2.3e-46 192.2 1355 26.1
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 5.1e-46 191.0 1196 26.9
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 8.7e-46 190.3 1303 26.4
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 3.3e-45 188.3 1160 26.2
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 5.6e-45 187.6 1254 25.7
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.8e-44 185.3 1328 26.3
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 8.1e-44 183.7 1357 25.8
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.1e-43 183.3 1377 25.6
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.4e-43 183.0 1204 26.8
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 1.0e-41 176.8 1350 25.3
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 1.0e-41 176.8 1380 25.9
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.7e-41 176.0 1148 26.1
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.9e-41 174.5 1321 25.5
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 2.5e-40 172.2 1315 24.8
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 5.5e-40 171.0 1343 26.2
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 5.5e-40 171.0 1264 26.0
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 9.3e-40 170.2 1343 26.1
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 1.2e-39 169.9 1344 26.0
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 2.1e-39 169.1 1125 26.3
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.1e-39 169.1 1344 25.9
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 4.6e-39 167.9 1348 26.1
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 7.9e-39 167.2 1359 26.4
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 3.3e-37 161.8 589 30.7
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 3.3e-37 161.8 1116 26.0
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 8.2e-36 157.1 1145 26.7
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 1.8e-35 156.0 1288 24.4
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 2.6e-34 152.1 296 38.9
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.5e-34 151.4 733 28.0
BcaC04g19101 Brassica carinata HOM05D010678 ORTHO05D006673 1.0e-33 150.2 94 79.8
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 1.3e-33 149.8 1051 26.6
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 6.5e-33 147.5 1271 26.4
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.6e-31 142.9 1283 25.9
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 4.8e-28 131.3 515 28.5
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 2.9e-25 122.1 476 30.7
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 5.0e-25 121.3 492 31.3
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 4.6e-23 114.8 1369 23.2
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.9e-22 111.7 1029 25.4
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 1.4e-19 103.2 700 25.7
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.4e-19 103.2 1398 23.2
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 3.1e-19 102.1 471 29.5
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 4.1e-19 101.7 1346 23.5
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 5.3e-19 101.3 1366 23.7
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 2.6e-18 99.0 742 25.1
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 4.5e-18 98.2 750 24.8
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 7.2e-16 90.9 1098 22.9
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 9.4e-16 90.5 689 25.0
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 1.2e-15 90.1 531 27.7
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 3.0e-14 85.5 592 27.4
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.0e-14 85.5 1178 24.0
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.3e-13 82.0 294 31.0
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 5.7e-13 81.3 461 26.9
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 2.2e-12 79.3 1344 23.7
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 8.2e-12 77.4 458 27.3
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 5.9e-10 71.2 1021 24.3
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 4.2e-08 65.1 441 26.5
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 4.2e-08 65.1 294 28.9
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.4e-06 60.1 347 25.9


User provided reference genes

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