Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 2.6e-130 468.8 245 100.0
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 6.2e-124 447.6 245 95.1
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 1.4e-120 436.4 243 95.1
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 6.9e-115 417.5 245 89.0
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 2.6e-114 415.6 245 89.0
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 5.8e-114 414.5 245 88.2
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 7.6e-114 414.1 245 88.2
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 8.4e-113 410.6 245 87.3
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 8.4e-113 410.6 245 87.8
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 2.4e-112 409.1 245 87.8
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 3.2e-112 408.7 245 86.9
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 7.1e-112 407.5 245 86.9
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 1.6e-111 406.4 245 86.5
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 1.6e-111 406.4 245 86.5
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 2.1e-111 406.0 245 86.9
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 4.6e-111 404.8 246 87.4
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 4.6e-111 404.8 246 87.4
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 4.6e-111 404.8 245 87.3
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 4.5e-106 388.3 247 84.2
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 4.5e-106 388.3 247 84.2
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.6e-103 379.8 261 76.6
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 3.9e-102 375.2 251 81.3
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 4.5e-90 335.1 265 68.3
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 2.3e-78 296.2 246 61.8
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 5.2e-78 295.0 244 62.7
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 2.0e-74 283.1 246 59.3
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 4.7e-71 271.9 246 57.7
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.0e-70 270.8 245 58.4
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 5.2e-70 268.5 247 56.3
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 5.2e-70 268.5 251 56.2
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 6.7e-70 268.1 276 54.3
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 6.7e-70 268.1 247 56.3
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 1.2e-69 267.3 252 55.2
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 1.2e-69 267.3 247 56.3
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 1.5e-69 266.9 245 56.3
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 2.0e-69 266.5 244 57.4
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 2.0e-69 266.5 245 57.1
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 2.6e-69 266.2 240 55.4
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.6e-69 266.2 251 55.8
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 3.3e-69 265.8 246 57.3
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 3.3e-69 265.8 248 57.7
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 3.3e-69 265.8 246 55.7
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 3.3e-69 265.8 250 56.0
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 4.4e-69 265.4 260 54.6
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 4.4e-69 265.4 248 56.5
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 7.5e-69 264.6 246 56.1
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 7.5e-69 264.6 253 56.1
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 7.5e-69 264.6 250 55.2
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 9.7e-69 264.2 245 56.7
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-68 263.8 253 56.5
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 1.3e-68 263.8 252 55.2
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.7e-68 263.5 251 54.6
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.2e-68 263.1 253 56.1
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 2.2e-68 263.1 248 56.9
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.8e-68 262.7 245 54.3
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 3.7e-68 262.3 242 58.7
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 3.7e-68 262.3 241 58.1
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 4.8e-68 261.9 251 56.6
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 4.8e-68 261.9 251 55.8
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 4.8e-68 261.9 249 55.4
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.3e-68 261.5 251 56.6
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.3e-68 261.5 251 56.6
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 1.1e-67 260.8 246 56.5
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 1.1e-67 260.8 248 55.6
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 1.1e-67 260.8 253 55.3
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 2.4e-67 259.6 249 55.0
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 2.4e-67 259.6 252 55.2
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 4.1e-67 258.8 251 56.6
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 9.1e-67 257.7 246 53.7
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 1.2e-66 257.3 252 55.2
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 2.0e-66 256.5 243 55.1
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 2.7e-66 256.1 251 55.4
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 4.5e-66 255.4 205 62.4
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 5.9e-66 255.0 245 54.7
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 5.9e-66 255.0 249 53.0
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.3e-65 253.8 250 54.4
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.7e-65 253.4 251 55.4
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 1.7e-65 253.4 240 55.0
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.2e-65 253.1 246 53.7
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 2.9e-65 252.7 247 52.6
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 2.9e-65 252.7 249 53.8
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 2.9e-65 252.7 240 54.6
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 1.1e-64 250.8 246 55.3
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.1e-64 250.8 252 52.0
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.5e-64 250.4 250 53.6
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 2.5e-64 249.6 247 54.3
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 2.5e-64 249.6 245 53.5
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 4.2e-64 248.8 280 50.7
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 7.2e-64 248.1 246 54.1
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 7.2e-64 248.1 253 53.8
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.2e-63 247.3 248 53.6
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 2.1e-63 246.5 260 53.5
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 2.1e-63 246.5 242 54.1
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 2.1e-63 246.5 192 63.0
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 3.6e-63 245.7 248 53.2
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 3.6e-63 245.7 241 55.2
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 4.7e-63 245.4 253 50.2
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 8.0e-63 244.6 279 50.2
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 8.0e-63 244.6 244 54.1
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 8.0e-63 244.6 250 54.0
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.0e-62 244.2 240 52.9
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 1.0e-62 244.2 243 51.4
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.8e-62 243.4 237 53.2
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 1.8e-62 243.4 243 52.3
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 2.3e-62 243.0 201 60.7
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 4.0e-62 242.3 244 51.6
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 8.8e-62 241.1 239 53.6
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 3.4e-61 239.2 251 50.2
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 3.4e-61 239.2 246 51.6
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 4.4e-61 238.8 249 51.0
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 5.7e-61 238.4 247 50.6
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 7.5e-61 238.0 249 50.6
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 7.5e-61 238.0 258 50.8
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.3e-60 237.3 235 53.6
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 3.7e-60 235.7 202 56.9
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 3.7e-60 235.7 244 51.6
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 4.8e-60 235.3 270 50.0
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 1.4e-59 233.8 243 48.6
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.8e-59 233.4 249 49.4
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.4e-59 233.0 247 49.4
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 5.4e-59 231.9 142 83.8
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 7.0e-59 231.5 217 55.8
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 1.6e-58 230.3 248 49.6
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 1.6e-58 230.3 248 50.8
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.7e-58 229.6 235 51.5
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 7.7e-58 228.0 251 48.6
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 5.5e-56 221.9 218 54.1
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 8.0e-55 218.0 202 54.0
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 1.5e-53 213.8 259 45.9
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.0e-53 213.4 262 44.7
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.6e-53 213.0 250 47.6
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 5.7e-53 211.8 258 44.6
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.7e-52 209.1 259 45.6
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 3.1e-51 206.1 242 47.1
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 2.7e-50 203.0 231 49.8
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 3.5e-50 202.6 254 45.7
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 3.5e-50 202.6 254 48.8
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.3e-49 199.9 110 93.6
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.9e-49 199.5 354 37.6
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 3.6e-47 192.6 213 46.0
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 4.7e-47 192.2 203 47.8
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 1.0e-46 191.0 358 35.8
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 8.9e-46 188.0 163 56.4
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.3e-44 184.1 201 52.2
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 2.5e-40 169.9 244 43.4
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 2.5e-40 169.9 194 46.4
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 1.2e-39 167.5 193 49.2
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.2e-39 167.5 202 41.6
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.6e-39 167.2 290 39.3
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.8e-39 166.4 202 41.6
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 3.5e-34 149.4 226 39.8
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 3.9e-33 146.0 224 36.2
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.6e-31 140.6 139 53.2
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 4.7e-31 139.0 160 46.9
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 1.1e-30 137.9 148 48.6
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 6.8e-30 135.2 116 55.2
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 9.9e-29 131.3 98 64.3
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 4.1e-27 125.9 189 34.9
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 9.2e-27 124.8 156 41.7
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 3.9e-25 119.4 184 34.8
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 6.6e-25 118.6 67 89.6
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 2.5e-24 116.7 167 39.5
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 5.6e-24 115.5 67 88.1
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 8.9e-22 108.2 192 33.3
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 4.4e-21 105.9 183 31.7
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 5.8e-21 105.5 143 42.0
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.3e-20 104.4 86 59.3
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 6.4e-20 102.1 203 29.1
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 6.4e-20 102.1 72 70.8
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 8.4e-20 101.7 192 40.1
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 8.4e-20 101.7 72 68.1
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 1.2e-15 87.8 102 48.0
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 5.2e-14 82.4 79 50.6
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.8e-13 79.0 70 54.3
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 7.6e-13 78.6 74 50.0
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.7e-12 77.4 70 51.4
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.2e-12 77.0 70 51.4
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 2.7e-10 70.1 61 57.4
MCO11G452 Micromonas commoda HOM05D003160 ORTHO05D005967 1.0e-09 68.2 189 25.9
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 1.3e-09 67.8 177 27.7
BolC4t26421H Brassica oleracea HOM05D003972 ORTHO05D004609 3.3e-08 63.2 55 60.0
Pp3c23_11680 Physcomitrium patens HOM05D003160 ORTHO05D005967 1.3e-07 61.2 227 22.0
SEGI_06406 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 3.6e-07 59.7 196 23.5
PRCOL_00001524 Prasinoderma coloniale HOM05D003160 ORTHO05D005967 6.2e-07 58.9 159 25.2


User provided reference genes

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