Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 6.5e-128 460.7 225 100.0
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 3.3e-124 448.4 225 97.8
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 3.7e-123 444.9 225 96.0
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 9.1e-122 440.3 225 94.7
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 2.0e-121 439.1 225 94.2
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 2.6e-121 438.7 225 94.2
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 2.6e-121 438.7 225 94.2
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 4.5e-121 438.0 225 94.2
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 5.9e-121 437.6 225 93.8
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 1.7e-120 436.0 227 94.3
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 2.2e-120 435.6 225 93.8
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 5.4e-106 387.9 225 83.1
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 1.3e-96 356.7 225 76.9
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 1.5e-95 353.2 225 76.4
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.5e-95 352.4 225 76.4
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 2.5e-95 352.4 225 76.9
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 76.0
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.6e-94 349.7 225 77.8
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.6e-94 349.7 225 75.6
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 77.3
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 2.8e-94 349.0 225 75.1
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 3.6e-94 348.6 225 76.0
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 1.0e-93 347.1 225 76.0
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.4e-93 346.7 225 73.8
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.8e-93 346.3 225 74.7
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 2.3e-93 345.9 225 74.2
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 2.3e-93 345.9 225 76.9
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.2e-93 344.7 225 75.1
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 5.2e-93 344.7 225 75.1
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.5e-92 343.2 225 74.2
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.5e-92 343.2 223 74.0
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 75.1
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 74.7
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 73.3
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 73.3
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 76.0
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 72.9
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 73.8
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 72.9
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 75.6
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 5.8e-92 341.3 226 75.2
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 5.8e-92 341.3 225 72.4
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 7.5e-92 340.9 225 72.4
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 9.8e-92 340.5 226 75.2
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 9.8e-92 340.5 226 75.2
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.7e-91 339.7 225 72.9
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.2e-91 339.3 227 74.9
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 4.9e-91 338.2 225 73.8
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 6.4e-91 337.8 225 72.9
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 8.3e-91 337.4 225 74.2
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 72.9
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.4e-90 336.7 225 76.0
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.9e-90 336.3 225 71.6
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 3.2e-90 335.5 225 72.9
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.2e-90 335.5 225 75.6
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 74.7
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 74.2
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 5.4e-90 334.7 225 75.6
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 7.0e-90 334.3 225 72.0
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 9.2e-90 334.0 225 73.3
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 9.2e-90 334.0 279 63.1
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 1.2e-89 333.6 196 81.6
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 1.6e-89 333.2 225 72.0
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 3.5e-89 332.0 225 70.2
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 6.0e-89 331.3 225 74.7
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 7.8e-89 330.9 225 72.0
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 1.3e-88 330.1 225 69.8
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 1.3e-88 330.1 224 73.7
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 3.0e-88 328.9 226 71.2
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 8.6e-88 327.4 224 71.4
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 71.6
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 71.6
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 7.3e-87 324.3 229 76.4
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 9.5e-87 323.9 225 72.9
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.2e-86 323.6 225 71.1
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 2.1e-86 322.8 225 69.8
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 2.8e-86 322.4 225 71.6
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 3.6e-86 322.0 196 80.6
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 4.7e-86 321.6 225 72.0
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 4.7e-86 321.6 225 72.0
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 1.1e-85 320.5 225 71.1
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 8.9e-85 317.4 226 69.5
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 2.6e-84 315.8 228 69.3
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 3.4e-84 315.5 225 69.8
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 3.4e-84 315.5 260 63.5
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 4.4e-84 315.1 226 71.2
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 1.7e-83 313.2 226 67.3
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 1.7e-83 313.2 225 69.3
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 4.9e-83 311.6 225 68.4
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.1e-82 310.5 266 60.5
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.4e-82 310.1 225 70.2
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 2.4e-82 309.3 208 72.1
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 4.6e-81 305.1 232 67.7
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 6.0e-81 304.7 225 67.6
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 1.0e-80 303.9 225 67.6
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.7e-80 303.1 225 67.6
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 3.9e-80 302.0 225 68.0
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 2.5e-79 299.3 226 66.8
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 2.8e-78 295.8 219 64.4
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.4e-77 293.5 225 64.4
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.4e-77 293.5 225 68.4
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 2.3e-77 292.7 227 63.0
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 2.3e-77 292.7 227 63.0
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 6.8e-77 291.2 225 67.1
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 2.6e-76 289.3 225 67.1
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.4e-74 283.5 225 64.9
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 9.2e-74 280.8 177 78.0
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 3.9e-72 275.4 225 59.1
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 4.7e-70 268.5 227 58.6
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 8.1e-70 267.7 227 59.5
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 6.8e-69 264.6 170 80.0
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 4.9e-67 258.5 210 60.5
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 1.2e-65 253.8 243 56.0
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.3e-64 250.4 225 61.3
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 6.6e-64 248.1 225 59.1
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 4.3e-63 245.4 260 52.7
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 4.3e-63 245.4 260 52.7
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 7.3e-63 244.6 174 69.0
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.8e-61 240.0 226 56.2
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 4.4e-60 235.3 249 55.4
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 4.9e-59 231.9 225 52.4
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 7.1e-58 228.0 130 86.2
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 3.9e-48 195.7 225 48.0
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.1e-47 194.1 225 46.7
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 6.9e-45 184.9 210 46.7
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.5e-44 183.7 122 69.7
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 1.8e-40 170.2 231 42.9
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 3.0e-40 169.5 226 43.4
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 2.8e-38 162.9 225 40.9
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 2.7e-33 146.4 195 46.2
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.1e-31 141.0 100 67.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.5e-31 140.6 100 67.0
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 1.5e-28 130.6 150 50.7
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.8e-22 109.8 71 69.0
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 2.1e-17 93.6 78 57.7
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 2.3e-16 90.1 65 61.5
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 6.7e-16 88.6 105 47.6
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.1e-15 87.8 51 78.4
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.1e-15 87.8 51 78.4
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.6e-15 86.7 51 78.4
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 7.4e-15 85.1 51 76.5
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 8.2e-14 81.6 79 53.2
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 1.8e-13 80.5 122 42.6
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 7.0e-13 78.6 76 55.3
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.0e-11 74.7 51 74.5
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.3e-11 74.3 51 72.5
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 2.2e-11 73.6 250 27.6
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 9.4e-10 68.2 64 56.2
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 2.6e-07 60.1 51 56.9
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 5.7e-07 58.9 56 58.9


User provided reference genes

Program Settings