Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 3.9e-131 471.5 236 100.0
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 1.1e-125 453.4 236 95.8
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 1.3e-118 429.9 235 91.9
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 2.1e-116 422.5 234 89.7
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 2.7e-116 422.2 236 89.4
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 4.6e-116 421.4 234 89.3
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 1.0e-115 420.2 238 88.7
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 3.0e-115 418.7 235 87.2
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 5.1e-115 417.9 235 88.9
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 5.1e-115 417.9 237 88.6
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 1.9e-114 416.0 238 88.7
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 7.3e-114 414.1 234 88.0
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 7.3e-114 414.1 234 88.0
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 7.3e-114 414.1 234 88.0
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 7.3e-114 414.1 234 88.0
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 7.8e-108 394.0 239 85.4
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 1.6e-97 359.8 263 73.0
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.1e-90 337.0 227 70.9
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 7.4e-90 334.3 237 68.4
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.8e-89 332.4 243 67.5
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 6.2e-89 331.3 238 68.5
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 5.3e-88 328.2 239 68.6
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 9.0e-88 327.4 239 65.7
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 9.0e-88 327.4 234 67.1
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.3e-86 323.6 230 68.7
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 1.3e-86 323.6 233 67.4
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.2e-86 322.8 239 67.8
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 2.2e-86 322.8 236 66.9
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 2.9e-86 322.4 236 66.9
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 5.0e-86 321.6 234 67.1
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 8.4e-86 320.9 233 66.5
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 8.4e-86 320.9 239 66.9
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 1.4e-85 320.1 234 65.4
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 1.9e-85 319.7 231 67.5
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 4.2e-85 318.5 235 66.4
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 4.2e-85 318.5 238 66.8
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 5.5e-85 318.2 241 67.2
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 7.1e-85 317.8 223 68.2
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 9.3e-85 317.4 237 65.0
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 9.3e-85 317.4 223 67.7
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.2e-84 317.0 233 65.7
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.2e-84 317.0 231 66.2
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 3.5e-84 315.5 222 68.9
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 6.1e-84 314.7 229 67.7
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.0e-83 313.9 225 70.2
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.0e-83 313.9 251 63.7
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.3e-83 313.5 231 65.4
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 1.3e-83 313.5 223 67.3
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.8e-83 313.2 236 66.5
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.8e-83 313.2 240 65.4
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 3.0e-83 312.4 234 65.0
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 3.0e-83 312.4 234 67.9
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 3.9e-83 312.0 235 66.0
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 3.9e-83 312.0 235 65.1
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 3.9e-83 312.0 234 63.7
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 5.1e-83 311.6 228 67.1
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 6.7e-83 311.2 237 64.6
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 8.7e-83 310.8 270 59.3
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 1.9e-82 309.7 235 64.7
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 1.9e-82 309.7 235 64.3
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 3.3e-82 308.9 227 68.7
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 4.3e-82 308.5 234 64.1
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 7.4e-82 307.8 237 63.3
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 9.7e-82 307.4 240 64.2
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 1.6e-81 306.6 233 64.8
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 2.2e-81 306.2 230 65.7
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 6.3e-81 304.7 239 63.2
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 1.4e-80 303.5 233 64.4
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 1.4e-80 303.5 226 65.9
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 3.1e-80 302.4 237 65.4
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 6.9e-80 301.2 233 64.8
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.5e-79 300.1 240 63.3
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 2.6e-79 299.3 234 63.7
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 2.6e-79 299.3 213 68.5
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 4.5e-79 298.5 291 54.3
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 7.7e-79 297.7 233 65.2
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 2.2e-78 296.2 219 65.3
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 5.0e-78 295.0 275 55.6
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.2e-76 290.4 233 60.1
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 2.7e-76 289.3 233 61.8
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 4.6e-76 288.5 233 59.7
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 1.0e-75 287.3 235 62.6
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.0e-75 287.3 228 60.1
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.4e-75 287.0 226 63.7
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.4e-75 287.0 226 62.4
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 1.8e-75 286.6 235 60.9
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 6.7e-75 284.6 231 59.7
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.5e-74 283.5 238 61.8
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 1.5e-74 283.5 236 59.3
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 2.5e-74 282.7 215 64.2
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.3e-73 280.4 227 62.1
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 2.8e-73 279.3 236 60.6
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.8e-73 279.3 231 61.0
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 4.8e-73 278.5 223 61.9
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 6.3e-73 278.1 231 59.7
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 8.2e-73 277.7 223 61.9
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 3.1e-72 275.8 223 61.9
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 5.3e-72 275.0 230 60.9
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 6.9e-72 274.6 217 62.2
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 9.1e-72 274.2 232 59.1
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 9.1e-72 274.2 234 59.0
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 1.5e-71 273.5 223 61.0
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 2.0e-71 273.1 231 59.3
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 2.6e-71 272.7 236 58.5
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 5.9e-71 271.6 199 65.8
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 7.7e-71 271.2 223 60.5
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.2e-70 269.6 238 57.1
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.5e-70 268.1 260 53.8
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.4e-69 266.9 235 59.1
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 3.2e-69 265.8 237 59.5
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 1.2e-68 263.8 247 54.3
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 1.6e-68 263.5 209 62.7
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 8.8e-67 257.7 225 60.0
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 2.2e-65 253.1 191 63.9
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 2.9e-62 242.7 230 55.7
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 4.2e-61 238.8 173 67.6
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 7.2e-61 238.0 221 54.8
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.7e-60 236.1 273 49.1
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.1e-60 235.0 234 53.0
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 1.4e-59 233.8 224 53.6
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 3.3e-58 229.2 182 62.6
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.1e-56 224.2 243 53.5
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.4e-56 223.8 232 51.7
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.8e-56 223.4 146 73.3
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.4e-56 223.0 143 72.0
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 2.4e-56 223.0 241 49.8
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 5.3e-56 221.9 235 48.5
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.9e-55 218.4 266 45.1
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 7.7e-55 218.0 144 72.9
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.2e-54 216.5 229 51.1
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 8.5e-54 214.5 171 59.1
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 1.2e-52 210.7 141 69.5
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 7.5e-50 201.4 152 63.2
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.5e-45 185.3 158 57.0
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.6e-44 183.7 155 59.4
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 8.8e-43 177.9 233 42.1
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 5.7e-42 175.3 169 50.9
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 2.8e-41 172.9 166 51.8
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 4.5e-39 165.6 142 61.3
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.6e-34 149.8 95 71.6
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.4e-32 144.1 129 58.1
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 2.3e-30 136.7 214 37.9
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 6.4e-25 118.6 96 60.4
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.9e-24 117.1 93 61.3
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 3.2e-24 116.3 241 33.2
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.7e-23 113.2 119 51.3
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 2.5e-21 106.7 86 64.0
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 5.2e-19 99.0 236 29.7
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 1.5e-18 97.4 79 60.8
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.4e-08 64.3 60 51.7
Ca_28882_v3 Cicer arietinum L. HOM05D004983 ORTHO05D005847 2.7e-07 60.1 207 25.1
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 1.0e-06 58.2 181 29.3


User provided reference genes

Program Settings