Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.1e-238 829.7 443 100.0
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.5e-200 703.0 443 86.2
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.1e-198 696.8 456 84.6
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.1e-186 656.0 456 80.3
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.4e-182 643.3 447 80.3
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.8e-182 642.9 454 79.5
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.3e-167 593.6 454 76.7
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 2.4e-166 589.3 453 73.3
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 5.9e-165 584.7 450 74.7
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 1.7e-164 583.2 453 75.3
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.6e-160 569.3 447 73.4
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 9.7e-160 567.4 449 74.8
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.2e-154 550.4 443 70.7
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 2.2e-151 539.7 451 72.7
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.5e-147 526.2 404 75.2
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 2.3e-137 493.0 404 72.3
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 8.6e-132 474.6 452 67.7
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 5.6e-131 471.9 452 65.5
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 5.6e-131 471.9 452 65.5
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.9e-126 456.8 473 59.0
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.1e-117 426.8 464 56.9
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 6.9e-97 358.6 440 50.7
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 3.8e-95 352.8 459 50.3
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 6.6e-92 342.0 467 46.3
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 9.6e-91 338.2 447 47.9
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 2.1e-90 337.0 468 46.8
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.4e-89 333.6 467 47.3
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 6.9e-89 332.0 374 52.9
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 7.6e-88 328.6 447 46.1
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 9.9e-88 328.2 438 46.8
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 8.4e-87 325.1 408 49.8
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 7.1e-86 322.0 465 46.5
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 9.3e-86 321.6 461 46.2
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.6e-85 320.9 431 46.9
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.1e-85 320.5 469 45.2
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 6.0e-85 318.9 466 46.8
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.0e-84 316.6 466 46.6
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 8.7e-84 315.1 475 43.8
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 4.3e-83 312.8 383 48.6
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 5.6e-83 312.4 438 47.0
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.1e-82 310.5 450 43.8
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 3.7e-82 309.7 434 45.4
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 8.1e-82 308.5 434 44.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 1.1e-81 308.1 446 45.3
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 2.6e-80 303.5 443 44.2
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 4.5e-80 302.8 473 45.9
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 7.6e-80 302.0 411 47.2
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.2e-79 300.4 397 47.4
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 8.4e-79 298.5 458 42.8
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.1e-78 298.1 455 44.8
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 1.9e-78 297.4 450 43.3
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 9.3e-78 295.0 450 44.7
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.2e-77 294.7 463 42.5
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 2.7e-77 293.5 429 45.0
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 4.6e-77 292.7 386 47.9
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 7.9e-77 292.0 462 44.4
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.3e-76 290.4 415 46.5
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 3.0e-76 290.0 466 41.8
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 7.4e-75 285.4 347 50.1
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.6e-74 284.3 384 47.9
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.1e-73 280.0 343 47.8
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.1e-73 279.6 343 48.1
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.1e-73 279.6 370 46.8
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.4e-72 276.6 419 43.4
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.5e-72 276.2 298 52.0
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 1.3e-71 274.6 447 42.1
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 5.0e-71 272.7 453 43.3
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.9e-70 270.8 455 40.7
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.5e-70 269.2 444 42.6
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 9.3e-70 268.5 455 43.3
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 7.9e-69 265.4 457 40.9
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.0e-68 265.0 448 42.9
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.0e-68 265.0 457 40.5
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.3e-68 264.6 397 43.6
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 3.0e-68 263.5 464 40.1
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 3.9e-68 263.1 443 39.7
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 6.7e-68 262.3 405 41.0
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 6.7e-68 262.3 457 40.3
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 8.7e-68 261.9 464 42.0
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 8.7e-68 261.9 471 40.3
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 5.7e-67 259.2 455 41.8
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.8e-66 256.1 461 40.6
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 4.8e-66 256.1 461 40.6
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 6.3e-66 255.8 501 37.7
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 4.1e-65 253.1 457 38.7
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 4.1e-65 253.1 424 40.6
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 5.3e-65 252.7 411 41.8
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 2.6e-64 250.4 451 39.9
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 5.9e-64 249.2 316 45.9
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.8e-63 246.5 380 42.6
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 8.5e-63 245.4 452 39.8
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 8.5e-63 245.4 403 41.4
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 8.5e-63 245.4 454 38.3
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 2.7e-61 240.4 378 41.3
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 7.9e-61 238.8 438 38.8
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.8e-60 237.7 316 46.2
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 6.3e-58 229.2 385 39.7
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.1e-57 226.9 463 37.1
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 9.1e-57 225.3 432 39.1
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 4.5e-56 223.0 441 38.1
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.4e-52 211.5 464 36.9
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 2.4e-49 200.7 358 36.6
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 9.1e-49 198.7 451 34.6
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 9.1e-49 198.7 345 40.6
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.0e-48 197.6 273 41.8
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 2.1e-45 187.6 435 34.3
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.8e-44 184.5 398 34.4
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 3.0e-44 183.7 261 43.7
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 2.0e-40 171.0 363 38.6
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 3.8e-39 166.8 368 35.6
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.8e-39 166.8 362 35.1
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-38 164.9 191 47.1
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 1.6e-37 161.4 285 37.2
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 2.3e-36 157.5 248 40.3
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 5.2e-36 156.4 352 34.9
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-35 155.2 225 40.9
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.0e-32 144.4 147 51.7
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 5.9e-32 142.9 134 58.2
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 3.8e-31 140.2 464 28.4
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 3.2e-30 137.1 246 38.6
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 7.2e-30 136.0 142 52.1
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 2.7e-29 134.0 352 35.8
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 6.1e-29 132.9 275 36.4
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.0e-28 130.6 252 34.5
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.2e-28 129.8 297 35.4
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 2.6e-27 127.5 169 42.6
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 2.4e-25 120.9 145 49.0
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 9.5e-22 109.0 233 34.8
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 7.5e-19 99.4 226 38.9
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.1e-14 85.5 143 43.4
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 2.5e-14 84.3 147 44.2
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.6e-14 83.2 197 36.0
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 3.4e-11 73.9 88 47.7
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 1.3e-10 72.0 131 36.6
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 2.9e-10 70.9 83 50.6
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.7e-10 70.5 92 45.7
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.9e-09 68.2 161 36.0
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.2e-09 67.4 181 32.0
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 7.0e-09 66.2 119 37.0
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.1e-06 58.9 80 42.5


User provided reference genes

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