Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 3.7e-45 184.5 93 100.0
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 3.7e-45 184.5 93 100.0
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 4.4e-22 107.8 53 96.2
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 8.4e-21 103.6 53 90.6
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 1.1e-20 103.2 53 90.6
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 1.9e-20 102.4 53 90.6
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 2.1e-19 99.0 56 83.9
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.3e-18 96.3 56 80.4
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 2.3e-18 95.5 53 81.1
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 3.0e-18 95.1 56 78.6
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 3.0e-18 95.1 56 76.8
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 3.9e-18 94.7 53 79.2
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 5.1e-18 94.4 56 76.8
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.5e-17 92.8 56 78.6
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 1.5e-17 92.8 53 77.4
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 1.5e-17 92.8 53 77.4
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 2.5e-17 92.0 53 79.2
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 2.5e-17 92.0 53 79.2
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 3.3e-17 91.7 56 78.6
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 3.3e-17 91.7 53 77.4
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 3.3e-17 91.7 56 78.6
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 4.3e-17 91.3 56 76.8
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.2e-16 89.7 52 76.9
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 2.8e-16 88.6 56 73.2
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 3.6e-16 88.2 53 75.5
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 3.6e-16 88.2 53 71.7
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 6.2e-16 87.4 59 69.5
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 6.2e-16 87.4 53 75.5
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 6.2e-16 87.4 56 73.2
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 8.1e-16 87.0 53 75.5
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 1.1e-15 86.7 56 73.2
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 1.4e-15 86.3 53 75.5
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 1.4e-15 86.3 59 69.5
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 1.8e-15 85.9 53 75.5
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.8e-15 85.9 53 73.6
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 2.4e-15 85.5 53 73.6
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 3.1e-15 85.1 53 71.7
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 4.0e-15 84.7 53 71.7
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 5.2e-15 84.3 52 71.2
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 6.8e-15 84.0 77 58.4
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 6.8e-15 84.0 53 71.7
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 6.8e-15 84.0 52 71.2
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 1.2e-14 83.2 53 73.6
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 1.2e-14 83.2 53 73.6
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 1.2e-14 83.2 53 73.6
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 1.2e-14 83.2 53 69.8
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 1.5e-14 82.8 53 73.6
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 1.5e-14 82.8 56 69.6
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 1.5e-14 82.8 53 69.8
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.0e-14 82.4 56 69.6
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.0e-14 82.4 56 69.6
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 2.0e-14 82.4 56 67.9
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 2.0e-14 82.4 56 67.9
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 3.4e-14 81.6 53 71.7
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 3.4e-14 81.6 53 71.7
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 5.8e-14 80.9 53 71.7
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 5.8e-14 80.9 53 71.7
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 7.6e-14 80.5 53 69.8
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 9.9e-14 80.1 53 66.0
AL6G23320 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 1.3e-13 79.7 40 100.0
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 1.3e-13 79.7 53 67.9
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 2.9e-13 78.6 53 66.0
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 2.9e-13 78.6 53 66.0
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 3.8e-13 78.2 53 69.8
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 3.8e-13 78.2 56 66.1
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 4.9e-13 77.8 53 69.8
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 4.9e-13 77.8 53 62.3
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 1.4e-12 76.3 53 66.0
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.9e-12 75.9 48 70.8
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 2.4e-12 75.5 53 67.9
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 4.2e-12 74.7 53 67.9
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 1.6e-11 72.8 56 57.1
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 1.6e-11 72.8 53 60.4
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 2.1e-11 72.4 57 64.9
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 1.7e-10 69.3 50 60.0
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 3.9e-10 68.2 53 58.5
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 1.1e-09 66.6 34 82.4
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 4.8e-08 61.2 38 71.1
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 1.1e-07 60.1 38 73.7


User provided reference genes

Program Settings