Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 1.0e-33 147.1 145 100.0
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 1.4e-30 136.7 145 91.7
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 4.6e-26 121.7 145 91.7
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 7.9e-26 120.9 145 89.7
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 1.8e-25 119.8 145 86.9
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 3.9e-25 118.6 145 90.3
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 8.7e-25 117.5 145 87.6
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 8.7e-25 117.5 145 87.6
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 1.1e-24 117.1 145 87.6
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 1.1e-24 117.1 145 87.6
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 2.0e-21 106.3 145 77.2
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.0e-17 94.0 153 77.1
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 2.3e-17 92.8 165 46.1
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 1.1e-16 90.5 66 74.2
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 4.3e-16 88.6 153 75.2
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 4.3e-16 88.6 60 76.7
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 7.4e-16 87.8 66 71.2
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 7.4e-16 87.8 66 71.2
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 1.3e-15 87.0 61 70.5
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 1.6e-15 86.7 71 67.6
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 1.6e-15 86.7 55 74.5
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 1.6e-15 86.7 60 68.3
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 1.6e-15 86.7 62 74.2
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 1.6e-15 86.7 142 76.1
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 1.6e-15 86.7 146 71.9
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 1.6e-15 86.7 55 78.2
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 2.2e-15 86.3 59 71.2
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 2.8e-15 85.9 73 61.6
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 2.8e-15 85.9 72 62.5
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 3.7e-15 85.5 141 77.3
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 4.8e-15 85.1 53 79.2
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 4.8e-15 85.1 136 78.7
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 4.8e-15 85.1 59 69.5
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 4.8e-15 85.1 69 65.2
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 6.3e-15 84.7 60 71.7
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 8.2e-15 84.3 136 76.5
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 1.1e-14 84.0 136 73.5
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 1.1e-14 84.0 136 73.5
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 1.1e-14 84.0 141 74.5
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 1.1e-14 84.0 141 74.5
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 1.4e-14 83.6 136 73.5
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.4e-14 83.6 60 68.3
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 1.8e-14 83.2 57 71.9
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 3.1e-14 82.4 59 72.9
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 3.1e-14 82.4 136 72.8
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 4.1e-14 82.0 72 61.1
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 5.3e-14 81.6 53 75.5
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 6.9e-14 81.3 54 72.2
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 6.9e-14 81.3 56 67.9
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 9.0e-14 80.9 50 80.0
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 9.0e-14 80.9 59 71.2
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 9.0e-14 80.9 65 66.2
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 1.2e-13 80.5 58 69.0
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 1.2e-13 80.5 55 72.7
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 1.2e-13 80.5 55 72.7
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 1.5e-13 80.1 67 64.2
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 1.5e-13 80.1 71 60.6
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 1.5e-13 80.1 58 65.5
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 1.5e-13 80.1 56 71.4
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 2.0e-13 79.7 72 65.3
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 2.6e-13 79.3 56 69.6
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 2.6e-13 79.3 56 69.6
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 3.4e-13 79.0 64 67.2
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 4.5e-13 78.6 51 70.6
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 5.9e-13 78.2 75 54.7
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 5.9e-13 78.2 53 66.0
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 7.7e-13 77.8 65 63.1
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 7.7e-13 77.8 64 65.6
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 1.0e-12 77.4 59 67.8
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 1.7e-12 76.6 66 62.1
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 2.2e-12 76.3 52 69.2
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 2.9e-12 75.9 59 62.7
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 5.0e-12 75.1 53 66.0
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 8.5e-12 74.3 47 74.5
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 1.1e-11 73.9 55 67.3
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 1.4e-11 73.6 48 68.8
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 1.9e-11 73.2 54 68.5
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 1.9e-11 73.2 52 69.2
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 1.9e-11 73.2 52 71.2
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 2.5e-11 72.8 53 67.9
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 2.5e-11 72.8 81 53.1
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 5.5e-11 71.6 54 61.1
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 7.2e-11 71.2 52 69.2
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 7.2e-11 71.2 52 69.2
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 9.4e-11 70.9 48 64.6
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 3.6e-10 68.9 64 59.4
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 7.9e-10 67.8 60 60.0
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 3.0e-09 65.9 48 70.8
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 3.0e-09 65.9 45 73.3
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 5.1e-09 65.1 41 73.2
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 2.0e-08 63.2 46 67.4
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 2.0e-08 63.2 48 56.2
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 2.0e-08 63.2 40 77.5
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 2.5e-08 62.8 62 53.2
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 5.7e-08 61.6 59 59.3
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 9.7e-08 60.8 44 68.2
CBR_g48945 Chara braunii HOM05D007144 ORTHO05D008709 3.1e-06 55.8 61 47.5
SMO164G0043 Selaginella moellendorffii HOM05D007144 ORTHO05D008709 4.1e-06 55.5 53 50.9
Pp3c2_27120 Physcomitrium patens HOM05D007144 ORTHO05D008709 5.3e-06 55.1 43 58.1


User provided reference genes

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