Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 0.0e+00 1175.2 603 100.0
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 0.0e+00 1117.8 603 93.9
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 0.0e+00 1086.2 603 92.4
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.1e-310 1069.3 603 89.7
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.4e-310 1068.9 608 89.3
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 5.3e-310 1067.0 608 89.1
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.6e-309 1064.7 603 89.6
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 5.9e-309 1063.5 616 88.6
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.7e-308 1062.0 603 89.6
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.1e-306 1055.0 603 89.2
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.3e-292 1009.2 529 97.7
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.2e-290 1002.7 603 85.4
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.1e-290 1001.9 605 85.1
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 2.3e-289 998.4 604 85.1
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 6.0e-269 930.6 526 89.7
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 9.8e-264 913.3 603 79.8
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 8.3e-255 883.6 604 75.3
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 2.9e-223 778.9 606 63.2
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.9e-222 776.2 602 64.3
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.5e-216 756.5 600 64.3
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 7.6e-216 754.2 586 64.2
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 4.2e-214 748.4 606 62.2
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 9.3e-214 747.3 599 61.4
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 1.2e-213 746.9 593 62.9
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 8.7e-212 740.7 595 62.7
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 2.5e-211 739.2 598 60.7
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 3.7e-210 735.3 606 61.6
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.8e-210 734.9 606 60.4
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 5.9e-208 728.0 606 61.2
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.0e-207 727.2 607 59.5
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.3e-207 726.9 606 62.5
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 5.0e-207 724.9 606 62.4
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 8.5e-207 724.2 606 62.4
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.5e-206 722.6 599 60.4
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.2e-205 720.3 620 59.7
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.7e-205 719.2 593 60.5
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 4.6e-205 718.4 596 61.7
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 4.6e-205 718.4 596 60.2
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.3e-202 710.3 604 59.9
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.1e-201 707.2 603 59.5
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.4e-201 706.1 598 59.7
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 4.1e-201 705.3 593 59.5
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.2e-200 703.7 606 58.9
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 3.4e-200 702.2 591 59.1
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 3.4e-200 702.2 583 60.9
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 5.9e-200 701.4 587 59.5
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 1.4e-198 696.8 600 58.3
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 3.2e-198 695.7 599 59.9
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 9.4e-198 694.1 618 59.1
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.2e-197 693.7 591 59.1
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.7e-197 691.8 602 58.3
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 6.1e-197 691.4 600 58.3
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 7.9e-197 691.0 514 64.6
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.5e-195 686.8 599 58.9
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.0e-195 686.4 600 58.7
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 4.4e-195 685.3 603 56.6
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-194 683.7 598 58.4
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 3.7e-194 682.2 525 63.2
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.8e-194 681.8 607 58.0
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 1.4e-193 680.2 591 58.0
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.4e-193 680.2 603 58.0
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.4e-193 680.2 600 59.7
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 4.1e-193 678.7 594 57.2
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 4.1e-193 678.7 593 57.2
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 4.5e-192 675.2 585 57.8
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 7.7e-192 674.5 589 57.0
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.7e-191 673.3 622 55.8
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.7e-191 673.3 618 56.3
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.2e-191 672.9 601 57.6
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 5.0e-191 671.8 589 57.2
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 2.5e-190 669.5 790 47.1
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 4.2e-190 668.7 592 57.6
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.0e-188 664.1 588 58.2
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 1.5e-187 660.2 588 57.7
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 4.8e-186 655.2 578 58.3
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 8.2e-186 654.4 594 56.4
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.4e-185 652.9 583 56.3
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 4.1e-185 652.1 606 56.4
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.2e-184 650.6 512 61.9
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.7e-183 646.7 616 52.9
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 8.5e-183 644.4 590 56.6
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.1e-182 644.0 606 55.0
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 8.0e-181 637.9 641 52.7
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 4.4e-179 632.1 606 53.8
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 5.7e-179 631.7 610 54.1
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 5.0e-175 618.6 581 55.4
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 7.0e-169 598.2 564 55.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 2.7e-168 596.3 620 52.4
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.3e-167 593.2 484 59.5
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 5.0e-167 592.0 551 56.3
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 8.0e-165 584.7 605 51.1
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.2e-160 570.9 629 49.4
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.2e-157 560.8 604 48.8
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 6.0e-144 515.4 606 45.4
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 7.8e-144 515.0 356 70.8
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 8.6e-143 511.5 469 55.2
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 3.5e-128 463.0 604 43.9
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 3.2e-121 439.9 391 56.0
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 4.0e-116 422.9 447 48.1
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 9.9e-115 418.3 534 43.3
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 9.3e-113 411.8 516 42.2
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 8.7e-111 405.2 304 63.8
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 6.9e-108 395.6 506 41.9
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.9e-105 387.5 561 39.2
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 1.1e-102 378.3 357 54.6
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.8e-77 293.9 280 53.9
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.0e-74 285.4 216 65.7
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.2e-74 284.3 411 40.9
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.0e-70 271.2 289 50.5
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 5.7e-70 269.6 216 61.6
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.7e-70 269.6 354 41.2
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.3e-69 268.5 588 32.5
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 4.1e-68 263.5 360 36.7
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.1e-60 238.8 181 65.2
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.5e-41 175.3 94 91.5
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.3e-41 173.7 172 52.9
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.1e-36 159.1 116 69.8
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.4e-36 157.9 123 60.2
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 7.8e-35 152.9 112 61.6
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 6.4e-29 133.3 112 57.1
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.1e-27 128.3 269 35.7
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 4.7e-24 117.1 131 45.0
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.4e-23 115.5 372 26.1
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 4.0e-23 114.0 100 51.0
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.8e-22 110.2 108 48.1
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 6.4e-21 106.7 577 24.3
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 4.6e-19 100.5 80 53.8
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 6.0e-19 100.1 80 53.8
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 2.3e-18 98.2 128 38.3
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 2.3e-18 98.2 82 52.4
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.6e-16 90.9 75 54.7
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 1.5e-14 85.5 87 44.8
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.4e-14 84.3 105 39.0
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 7.6e-14 83.2 173 37.6
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 9.3e-12 76.3 123 39.8
AL3G48430 Arabidopsis lyrata HOM05D000229 ORTHO05D016563 4.6e-11 73.9 35 97.1
C03p06490 Brassica napus HOM05D005072 ORTHO05D006209 1.3e-10 72.4 61 60.7
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 3.6e-08 64.3 138 32.6
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 6.2e-08 63.5 239 23.8
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.8e-07 62.0 58 56.9
Oeu032047.1 Olea europaea HOM05D005072 ORTHO05D006209 4.0e-07 60.8 73 49.3


User provided reference genes

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