Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.9e-107 392.5 199 100.0
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 5.6e-107 391.0 199 99.5
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 6.8e-105 384.0 199 97.0
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 4.4e-104 381.3 199 96.0
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 7.6e-104 380.6 199 96.5
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.3e-103 379.8 199 96.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.9e-103 378.6 199 96.0
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.9e-103 378.6 199 96.0
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 8.4e-103 377.1 199 95.5
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 3.2e-102 375.2 199 95.5
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 3.2e-102 375.2 199 95.5
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 2.3e-100 369.0 199 95.0
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 3.0e-100 368.6 200 94.5
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.1e-99 366.7 199 94.0
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 7.3e-99 364.0 200 93.5
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.0e-92 342.0 199 86.4
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 5.6e-91 337.8 199 86.9
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 5.8e-88 327.8 201 82.6
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 9.9e-88 327.0 181 92.8
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.2e-86 321.6 199 79.4
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 7.1e-86 320.9 199 79.9
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 7.1e-86 320.9 201 82.1
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 7.1e-86 320.9 199 81.4
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 9.3e-86 320.5 201 81.1
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.6e-85 319.7 201 80.1
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 3.5e-85 318.5 199 79.9
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 3.5e-85 318.5 198 79.3
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.6e-85 318.2 199 80.4
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 6.0e-85 317.8 199 78.4
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 7.9e-85 317.4 197 80.7
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.3e-84 315.8 197 80.2
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 3.9e-84 315.1 199 79.9
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.9e-84 315.1 201 76.1
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.9e-84 315.1 199 77.4
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.1e-84 314.7 200 79.0
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 6.7e-84 314.3 199 79.4
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 8.7e-84 313.9 199 78.9
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.7e-84 313.9 201 79.1
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.7e-84 313.9 201 79.1
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 8.7e-84 313.9 199 80.4
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 8.7e-84 313.9 199 78.9
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.1e-83 313.5 199 80.4
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.1e-83 313.5 199 78.9
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.1e-83 313.5 201 79.6
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.9e-83 312.8 199 77.4
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 3.3e-83 312.0 199 78.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.3e-83 312.0 199 78.4
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.3e-83 312.0 200 81.0
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 3.3e-83 312.0 199 78.4
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 5.6e-83 311.2 199 78.9
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 7.4e-83 310.8 199 76.9
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 7.4e-83 310.8 199 77.9
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 7.4e-83 310.8 199 79.9
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.4e-83 310.8 199 78.9
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 9.6e-83 310.5 199 77.4
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 9.6e-83 310.5 199 77.4
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.3e-82 310.1 199 79.9
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.3e-82 310.1 199 76.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 2.1e-82 309.3 199 77.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.8e-82 308.9 199 74.9
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 2.8e-82 308.9 197 76.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 4.8e-82 308.1 199 77.9
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.1e-81 307.0 197 77.2
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 1.1e-81 307.0 199 78.9
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.1e-81 307.0 201 75.1
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.1e-81 305.4 199 76.9
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 3.1e-81 305.4 201 77.1
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.0e-81 305.1 199 76.9
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 4.0e-81 305.1 201 77.1
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 9.0e-81 303.9 188 81.4
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.0e-81 303.9 201 74.6
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 1.5e-80 303.1 197 78.2
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.5e-80 303.1 200 74.5
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.5e-80 303.1 199 75.9
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.4e-80 302.0 199 74.9
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 4.5e-80 301.6 198 77.3
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 5.8e-80 301.2 181 82.3
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 5.8e-80 301.2 199 76.9
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 7.6e-80 300.8 199 75.4
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.0e-79 300.4 197 76.6
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.0e-79 300.4 197 75.1
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.3e-79 300.1 199 74.4
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.3e-79 300.1 199 74.4
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.7e-79 299.7 199 76.9
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.7e-79 299.7 199 77.4
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 2.9e-79 298.9 201 76.6
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.9e-79 298.9 199 73.9
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.9e-79 298.9 204 72.1
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.8e-79 298.5 197 75.6
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.8e-79 298.5 197 75.6
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.9e-79 298.1 200 75.5
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.9e-79 298.1 199 74.9
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 6.5e-79 297.7 200 75.0
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 8.4e-79 297.4 199 74.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 8.4e-79 297.4 197 75.1
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 8.4e-79 297.4 199 74.4
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.2e-78 295.4 197 73.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 7.1e-78 294.3 197 75.1
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 7.1e-78 294.3 223 70.9
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 3.5e-77 292.0 197 73.1
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 4.6e-77 291.6 201 72.6
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 4.6e-77 291.6 197 72.6
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.0e-77 291.2 205 72.7
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.3e-76 290.0 206 71.8
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.8e-76 289.7 209 71.3
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.3e-76 289.3 199 73.4
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 3.0e-76 288.9 199 70.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 3.0e-76 288.9 199 73.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.9e-76 288.5 197 73.6
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.1e-76 288.1 220 67.3
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 6.7e-76 287.7 197 72.1
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.9e-75 286.2 183 79.2
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.9e-75 286.2 199 73.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 2.5e-75 285.8 199 71.4
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 7.4e-75 284.3 215 69.3
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 2.8e-74 282.3 198 69.2
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 3.7e-74 282.0 200 74.0
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.7e-74 282.0 213 67.1
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 6.3e-74 281.2 197 70.1
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 8.2e-74 280.8 180 77.8
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 4.1e-73 278.5 213 70.4
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 6.9e-73 277.7 199 71.9
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 3.4e-72 275.4 199 70.4
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 3.4e-72 275.4 201 72.1
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.0e-71 273.9 198 66.7
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.3e-71 273.5 248 59.7
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.8e-71 271.9 180 75.6
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.8e-71 271.9 181 76.8
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.9e-70 269.6 197 67.0
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.8e-68 263.1 194 68.0
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.3e-68 262.7 204 69.1
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 3.9e-68 261.9 182 72.5
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 6.7e-68 261.2 197 69.5
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.2e-66 256.1 220 62.3
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.8e-66 255.8 201 64.7
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.7e-66 255.4 199 66.8
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 6.3e-66 254.6 233 62.2
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.5e-64 250.0 194 61.9
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.9e-64 248.1 188 63.3
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 2.2e-63 246.1 183 65.6
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 4.8e-58 228.4 180 66.7
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.5e-56 223.4 199 58.8
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 2.6e-56 222.6 182 67.6
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 5.9e-56 221.5 188 68.6
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.9e-54 216.5 154 74.0
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.6e-53 213.4 199 58.3
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.9e-47 192.6 114 84.2
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.5e-46 189.5 121 75.2
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 9.1e-41 171.0 99 85.9
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 5.9e-40 168.3 104 84.6
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.1e-38 164.1 99 83.8
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 7.2e-38 161.4 202 53.5
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 4.8e-34 148.7 211 48.8
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.4e-33 147.1 102 71.6
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 6.8e-28 128.3 70 88.6
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 8.8e-28 127.9 110 64.5
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.2e-27 127.5 79 74.7
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 2.6e-27 126.3 199 47.2
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 6.3e-26 121.7 71 73.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 5.4e-25 118.6 199 45.7
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 9.2e-25 117.9 198 38.4
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 7.3e-22 108.2 98 62.2
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.4e-20 104.0 110 49.1
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 3.7e-18 95.9 76 67.1
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 2.7e-16 89.7 65 67.7
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 8.6e-15 84.7 66 59.1
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 8.6e-15 84.7 62 62.9
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.5e-14 81.3 51 78.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.6e-13 80.5 53 75.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 1.8e-12 77.0 173 34.1
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 3.4e-11 72.8 59 62.7
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.2e-09 66.2 70 54.3
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.6e-06 55.5 57 54.4


User provided reference genes

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