Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 1.8e-139 499.2 248 100.0
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 2.2e-129 465.7 248 93.1
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 4.4e-117 424.9 250 84.8
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 5.7e-117 424.5 248 85.9
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 1.3e-116 423.3 248 83.9
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 1.2e-114 416.8 248 83.5
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 9.7e-109 397.1 248 80.6
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 8.2e-108 394.0 250 80.4
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 1.6e-106 389.8 250 81.2
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 5.0e-105 384.8 250 79.2
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 1.1e-104 383.6 248 77.8
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 1.5e-104 383.3 248 78.6
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 5.5e-104 381.3 250 78.4
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 1.2e-103 380.2 252 78.2
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 1.3e-100 370.2 248 76.2
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 4.1e-99 365.2 236 80.1
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 5.4e-91 338.2 250 67.6
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 2.2e-84 316.2 248 68.1
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 7.5e-69 264.6 254 50.4
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 2.7e-66 256.1 237 54.0
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 6.0e-66 255.0 257 51.4
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 5.1e-65 251.9 257 48.2
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 7.3e-64 248.1 228 55.7
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 7.3e-64 248.1 256 53.1
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 9.5e-64 247.7 256 50.4
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 2.8e-63 246.1 257 49.4
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 8.1e-63 244.6 233 51.1
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 1.1e-62 244.2 241 49.8
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 1.4e-62 243.8 236 52.5
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 1.4e-62 243.8 257 49.4
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 1.8e-62 243.4 256 49.2
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 2.4e-62 243.0 253 49.4
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 5.2e-62 241.9 253 47.8
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 2.0e-61 240.0 233 52.4
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 4.4e-61 238.8 257 49.0
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 4.4e-61 238.8 262 50.0
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 5.8e-61 238.4 234 51.7
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 5.8e-61 238.4 249 48.2
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 7.6e-61 238.0 257 47.1
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 9.9e-61 237.7 236 48.3
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 2.2e-60 236.5 250 48.0
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 2.2e-60 236.5 253 46.6
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 2.2e-60 236.5 253 46.6
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 4.9e-60 235.3 255 47.1
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 8.4e-60 234.6 254 48.0
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 1.4e-59 233.8 257 48.2
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 1.9e-59 233.4 244 48.8
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 3.2e-59 232.6 230 52.6
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 7.1e-59 231.5 244 48.0
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 7.1e-59 231.5 259 45.6
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 9.2e-59 231.1 227 51.1
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 9.2e-59 231.1 253 46.6
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 1.2e-58 230.7 232 50.9
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.6e-58 230.3 258 48.8
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 1.6e-58 230.3 252 46.8
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 2.1e-58 229.9 234 50.0
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 2.1e-58 229.9 253 46.6
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 2.7e-58 229.6 236 48.3
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 3.5e-58 229.2 233 48.5
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 6.0e-58 228.4 230 50.4
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 7.8e-58 228.0 255 48.2
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 1.0e-57 227.6 251 48.6
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 3.9e-57 225.7 250 46.8
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 5.1e-57 225.3 249 47.4
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 6.6e-57 224.9 230 49.6
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 6.6e-57 224.9 251 47.0
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 8.7e-57 224.6 228 46.1
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 8.7e-57 224.6 250 50.4
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 1.1e-56 224.2 228 50.0
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 1.5e-56 223.8 232 47.4
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 9.6e-56 221.1 233 48.5
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 1.2e-55 220.7 255 47.1
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 2.1e-55 219.9 225 48.9
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 2.1e-55 219.9 232 48.7
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 3.6e-55 219.2 248 44.8
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 6.2e-55 218.4 250 46.8
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 6.2e-55 218.4 254 44.9
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 4.0e-54 215.7 230 47.8
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 3.4e-53 212.6 252 45.6
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 5.8e-53 211.8 226 47.8
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 9.9e-53 211.1 227 48.5
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 2.2e-52 209.9 251 44.6
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 8.4e-52 208.0 228 49.6
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 3.2e-51 206.1 254 43.7
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 4.2e-51 205.7 236 45.3
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 4.2e-51 205.7 228 44.7
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 4.2e-51 205.7 322 38.8
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 7.1e-51 204.9 250 43.2
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.6e-50 203.8 231 46.3
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 2.1e-50 203.4 236 44.9
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 3.5e-50 202.6 251 43.0
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 4.6e-50 202.2 252 42.5
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 5.1e-49 198.7 229 46.3
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.9e-48 196.8 228 44.3
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 8.1e-47 191.4 221 46.6
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 2.6e-45 186.4 276 39.1
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 4.5e-45 185.7 257 42.0
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.3e-44 184.1 376 33.0
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 1.3e-44 184.1 235 43.8
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.7e-44 183.7 376 33.0
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 2.2e-44 183.3 163 52.8
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 2.7e-42 176.4 236 40.7
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 6.0e-42 175.3 236 40.7
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 6.7e-41 171.8 240 42.5
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 1.9e-40 170.2 228 39.9
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 1.3e-39 167.5 240 40.8
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 2.1e-39 166.8 197 45.2
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 6.2e-39 165.2 227 44.1
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 6.4e-36 155.2 248 40.7
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 4.2e-35 152.5 216 40.7
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 1.6e-34 150.6 142 49.3
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 7.9e-34 148.3 246 35.8
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 3.9e-33 146.0 211 39.3
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 3.9e-33 146.0 229 38.0
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 1.9e-32 143.7 195 40.5
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 4.3e-32 142.5 263 32.7
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 3.7e-31 139.4 204 40.2
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.4e-30 137.5 172 43.6
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 2.6e-29 133.3 159 42.8
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 1.7e-28 130.6 247 36.8
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 1.2e-26 124.4 234 35.0
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 4.1e-14 82.8 55 69.1


User provided reference genes

Program Settings