Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.2e-78 294.7 153 100.0
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.3e-60 235.7 126 99.2
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.3e-31 140.2 144 64.6
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.9e-31 138.7 148 58.8
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.5e-30 136.7 148 58.8
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 1.5e-27 126.7 147 53.7
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 1.3e-26 123.6 149 51.7
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 2.7e-24 115.9 148 50.0
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 2.7e-24 115.9 148 50.7
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.5e-24 115.5 127 59.8
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 1.0e-23 114.0 148 49.3
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 3.0e-23 112.5 148 48.6
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.9e-22 109.8 149 47.7
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 1.9e-22 109.8 149 49.7
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.2e-21 107.1 148 50.0
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-21 107.1 94 66.0
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-21 107.1 55 100.0
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.6e-21 106.7 55 98.2
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.8e-20 103.2 148 46.6
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.3e-18 97.1 146 43.2
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 6.4e-18 94.7 150 42.0
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 1.2e-16 90.5 148 45.3
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.2e-16 90.5 148 45.3
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.7e-15 86.7 149 38.9
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.1e-14 84.0 150 40.0
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 2.5e-14 82.8 149 39.6
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 4.3e-14 82.0 170 40.0
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 4.3e-14 82.0 149 39.6
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 7.3e-14 81.3 149 38.9
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.6e-13 80.1 148 41.9
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.6e-13 80.1 151 39.7
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.6e-13 80.1 150 36.7
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 2.1e-13 79.7 149 39.6
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 2.8e-13 79.3 149 39.6
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 6.2e-13 78.2 152 36.8
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.1e-12 77.4 152 40.1
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 1.1e-12 77.4 148 37.8
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.1e-12 77.4 150 40.0
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.1e-12 77.4 149 39.6
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.4e-12 77.0 148 40.5
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 1.4e-12 77.0 153 36.6
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.8e-12 76.6 150 37.3
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 2.3e-12 76.3 151 39.1
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 3.1e-12 75.9 151 35.8
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 3.1e-12 75.9 149 37.6
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 4.0e-12 75.5 149 37.6
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 6.8e-12 74.7 149 36.2
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 6.8e-12 74.7 148 37.2
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 8.9e-12 74.3 149 35.6
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.2e-11 73.9 150 38.0
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 1.2e-11 73.9 150 38.0
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.5e-11 73.6 164 32.9
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 2.6e-11 72.8 151 38.4
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 3.4e-11 72.4 150 39.3
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 4.4e-11 72.0 162 35.2
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 4.4e-11 72.0 151 35.8
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 7.6e-11 71.2 148 39.2
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 9.9e-11 70.9 146 35.6
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 1.7e-10 70.1 150 38.0
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 2.2e-10 69.7 150 35.3
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 2.2e-10 69.7 164 32.3
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 2.9e-10 69.3 150 38.7
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 4.9e-10 68.6 150 37.3
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 1.1e-09 67.4 150 38.7
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.1e-09 67.4 148 39.2
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 1.1e-09 67.4 150 35.3
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.4e-09 67.0 148 37.2
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 1.9e-09 66.6 156 34.0
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 3.2e-09 65.9 150 38.0
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 3.2e-09 65.9 152 36.8
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.2e-09 65.9 152 36.2
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 9.2e-09 64.3 148 35.8
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.6e-08 63.5 151 33.8
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 3.5e-08 62.4 152 34.9
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 4.6e-08 62.0 159 32.1
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 6.0e-08 61.6 139 38.1
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 1.0e-07 60.8 149 38.3
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.0e-07 60.8 155 37.4
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.3e-07 60.5 149 35.6
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 2.3e-07 59.7 177 33.3
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 3.0e-07 59.3 137 35.0
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 3.0e-07 59.3 151 34.4
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 3.9e-07 58.9 154 33.8
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 5.1e-07 58.5 139 34.5
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 6.6e-07 58.2 151 33.8
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 6.6e-07 58.2 147 35.4
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 8.6e-07 57.8 149 34.9
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 8.6e-07 57.8 150 34.0
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.1e-06 57.4 70 52.9
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.1e-06 57.4 70 52.9
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 1.1e-06 57.4 138 34.1
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 1.1e-06 57.4 149 34.9
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 1.5e-06 57.0 157 32.5
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.5e-06 57.0 151 35.1
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.9e-06 56.6 152 32.9
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 3.3e-06 55.8 149 34.2
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 9.6e-06 54.3 152 33.6


User provided reference genes

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