Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 6.4e-140 500.7 254 100.0
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 2.4e-134 482.3 254 94.1
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 2.0e-133 479.2 254 94.5
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 4.4e-133 478.0 254 93.3
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 4.9e-132 474.6 254 93.7
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 2.3e-129 465.7 257 90.7
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 3.0e-129 465.3 258 90.3
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 2.5e-128 462.2 254 92.5
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 2.5e-128 462.2 254 92.5
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 3.3e-128 461.8 258 89.9
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 3.3e-128 461.8 258 89.9
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 7.4e-128 460.7 280 84.6
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 1.3e-127 459.9 256 90.2
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 2.0e-125 452.6 252 87.7
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 1.7e-124 449.5 254 91.3
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 3.2e-123 445.3 233 96.6
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 2.3e-113 412.5 254 80.7
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 9.6e-112 407.1 257 82.9
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 2.2e-100 369.4 190 96.8
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 9.7e-88 327.4 258 62.0
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 1.2e-85 320.5 258 61.6
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 7.7e-85 317.8 259 60.6
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 2.9e-84 315.8 257 60.7
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 6.1e-82 308.1 258 59.7
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 6.1e-82 308.1 259 59.5
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 3.0e-81 305.8 251 60.6
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 3.0e-81 305.8 258 59.3
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 2.6e-80 302.8 241 61.4
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 2.6e-80 302.8 259 59.1
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 4.4e-80 302.0 256 57.0
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 1.7e-79 300.1 259 59.8
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 2.2e-79 299.7 254 59.1
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 3.7e-79 298.9 257 57.6
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 1.4e-78 297.0 253 58.9
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 1.0e-76 290.8 258 55.4
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 1.0e-76 290.8 259 58.7
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 2.2e-76 289.7 148 93.9
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 8.5e-76 287.7 251 57.4
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 8.5e-76 287.7 258 57.4
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 2.5e-75 286.2 259 57.1
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.7e-74 282.7 259 56.4
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 8.0e-74 281.2 259 56.0
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 8.0e-74 281.2 248 58.5
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.0e-73 280.8 253 56.1
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 3.0e-73 279.3 245 55.5
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 5.2e-73 278.5 250 55.6
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 5.2e-73 278.5 249 56.6
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 8.8e-73 277.7 252 56.0
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 1.2e-72 277.3 257 55.3
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 1.5e-72 276.9 217 60.4
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 1.5e-72 276.9 250 56.0
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 2.6e-72 276.2 254 54.7
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.6e-72 276.2 259 56.0
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 5.7e-72 275.0 260 55.8
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 7.5e-72 274.6 252 55.6
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 9.8e-72 274.2 292 50.7
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 1.3e-71 273.9 253 53.8
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 1.7e-71 273.5 252 56.0
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 2.2e-71 273.1 248 57.3
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 2.8e-71 272.7 260 56.2
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 3.7e-71 272.3 260 56.2
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 1.1e-70 270.8 240 58.3
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 1.1e-70 270.8 238 58.0
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 1.8e-70 270.0 252 55.2
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 3.1e-70 269.2 252 54.4
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 3.1e-70 269.2 246 56.5
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 4.1e-70 268.9 252 55.6
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 4.1e-70 268.9 240 56.7
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 9.1e-70 267.7 253 51.8
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 1.6e-69 266.9 250 52.0
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 2.7e-69 266.2 253 52.6
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 2.7e-69 266.2 249 56.6
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 3.5e-69 265.8 248 53.6
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 4.5e-69 265.4 248 54.4
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 5.9e-69 265.0 246 54.1
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 7.7e-69 264.6 230 59.6
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 2.9e-68 262.7 251 53.0
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 6.5e-68 261.5 250 54.4
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 8.5e-68 261.2 212 61.3
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 1.1e-67 260.8 257 52.5
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 2.5e-67 259.6 251 52.2
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 2.5e-67 259.6 237 55.7
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 2.5e-67 259.6 237 55.7
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 2.7e-66 256.1 230 55.7
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 8.8e-65 251.1 257 49.4
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 8.8e-65 251.1 256 50.4
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 4.4e-64 248.8 229 55.5
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 8.3e-63 244.6 217 54.4
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 1.1e-62 244.2 245 50.6
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 3.1e-62 242.7 217 53.9
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 4.5e-61 238.8 247 52.2
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 1.0e-60 237.7 216 54.6
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 3.8e-60 235.7 237 51.5
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 5.0e-60 235.3 244 50.4
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 4.0e-57 225.7 224 54.9
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 2.6e-56 223.0 250 48.4
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 3.2e-54 216.1 215 51.6
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 1.1e-51 207.6 331 38.4
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 1.5e-51 207.2 245 47.3
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 1.2e-48 197.6 173 54.9
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 3.7e-47 192.6 170 57.1
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 1.4e-38 164.1 132 62.9
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 1.7e-36 157.1 250 40.8
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 5.8e-32 142.1 110 68.2
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.9e-30 137.1 116 57.8
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.9e-30 137.1 116 57.8
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 9.2e-30 134.8 136 49.3
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 9.9e-24 114.8 206 35.0
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 4.2e-22 109.4 154 42.2
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 1.0e-20 104.8 128 46.1
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 3.3e-19 99.8 95 50.5
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.3e-19 99.4 88 58.0
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 2.4e-17 93.6 198 29.8
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 2.4e-14 83.6 104 43.3
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 7.9e-13 78.6 223 27.8
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 4.3e-11 72.8 62 51.6
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 2.9e-07 60.1 119 31.9


User provided reference genes

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