Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 0.0e+00 2181.4 1103 100.0
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 0.0e+00 1985.3 1104 91.7
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 0.0e+00 1917.9 1105 89.4
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 0.0e+00 1664.0 1118 78.7
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 0.0e+00 1411.7 1149 71.4
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 0.0e+00 1220.7 1177 63.0
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 0.0e+00 1212.6 1132 64.3
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 0.0e+00 1161.4 1122 62.0
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 0.0e+00 1160.2 1123 62.0
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 0.0e+00 1160.2 1123 62.0
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 0.0e+00 1144.8 1127 61.8
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 0.0e+00 1143.3 1127 61.8
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 0.0e+00 1108.6 1136 61.2
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 2.0e-310 1069.3 1138 60.1
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 4.0e-303 1045.0 1136 59.4
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 4.0e-287 991.9 1205 53.4
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.0e-283 979.5 1204 53.2
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 6.2e-272 941.4 1111 53.2
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.6e-248 863.6 1160 51.7
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 5.9e-214 748.8 1126 46.8
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.1e-201 708.0 739 60.2
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 3.3e-193 679.9 742 58.8
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 5.7e-193 679.1 1164 44.4
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.7e-192 677.6 1166 44.4
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 2.2e-192 677.2 1164 44.5
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.1e-191 674.9 1166 44.3
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.8e-191 674.1 1166 44.3
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 7.2e-95 353.2 1265 29.2
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.8e-91 341.3 1262 29.2
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.5e-89 335.5 1263 29.5
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 8.0e-86 323.2 1261 28.5
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 7.0e-82 310.1 1258 28.2
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 7.2e-79 300.1 1282 27.5
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 9.4e-79 299.7 1262 28.4
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 8.0e-78 296.6 1239 28.3
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.3e-75 289.3 1282 27.7
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.5e-73 281.2 1252 27.6
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.0e-72 279.6 1253 27.8
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 8.5e-72 276.6 1293 27.8
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.5e-71 275.0 1251 27.7
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 3.2e-71 274.6 1272 27.5
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 7.2e-71 273.5 1310 27.5
C09p65300 Brassica napus HOM05D018796 ORTHO05D023922 4.0e-69 267.7 1288 26.9
BolC9t59357H Brassica oleracea HOM05D018796 ORTHO05D023922 1.3e-67 262.7 1308 26.3
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.7e-67 262.3 1280 26.4
A10p26230 Brassica napus HOM05D018796 ORTHO05D023922 8.3e-67 260.0 1314 26.3
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.1e-66 259.6 1336 26.7
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.4e-66 258.5 1220 27.2
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 1.3e-64 252.7 1295 27.0
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 2.5e-63 248.4 1337 26.9
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 3.3e-63 248.1 1295 26.7
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 9.5e-63 246.5 1286 26.5
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.2e-62 246.1 1266 26.4
BraA10t44680Z Brassica rapa HOM05D018796 ORTHO05D023922 2.8e-62 245.0 1339 25.7
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 6.1e-62 243.8 1273 27.3
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.4e-61 242.7 1296 27.1
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.7e-56 225.7 1272 25.7
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.9e-56 224.9 1271 25.5
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.8e-56 224.6 1275 25.8
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.1e-55 223.0 1269 25.5
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.8e-54 218.4 1330 26.5
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 3.4e-52 211.5 303 49.2
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 3.4e-52 211.5 1334 25.9
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 8.3e-51 206.8 939 27.4
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 7.0e-50 203.8 1228 25.7
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 4.3e-47 194.5 1252 25.3
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 8.0e-46 190.3 1234 26.5
BcaC04g19217 Brassica carinata HOM05D018796 ORTHO05D023922 3.1e-45 188.3 1271 24.3
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 8.9e-45 186.8 1204 25.7
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.3e-43 183.0 1239 24.8
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 2.9e-43 181.8 1196 25.6
BcaB08g37050 Brassica carinata HOM05D018796 ORTHO05D003767 6.4e-43 180.6 1097 25.9
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.1e-42 179.9 1250 25.6
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 7.8e-41 173.7 1243 25.7
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.7e-40 172.6 1313 23.8
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.7e-40 172.6 1253 25.6
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 5.1e-40 171.0 1243 25.8
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.5e-39 168.7 1222 24.8
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 7.3e-39 167.2 1226 24.7
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 3.6e-38 164.9 1235 25.3
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 2.2e-35 155.6 797 27.6
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 6.4e-35 154.1 1243 24.8
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 3.2e-34 151.8 1234 24.9
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 6.0e-33 147.5 380 33.4
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 5.1e-32 144.4 1264 24.7
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.1e-31 143.3 1229 23.5
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.6e-31 141.0 552 29.7
BcaB08g37051 Brassica carinata HOM05D018796 ORTHO05D003767 7.3e-31 140.6 421 34.7
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 2.1e-30 139.0 1220 24.0
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.8e-30 138.7 1152 23.0
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.8e-29 136.0 1230 24.1
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 2.4e-29 135.6 1060 25.6
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 5.2e-29 134.4 1199 25.4
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 8.9e-29 133.7 1265 24.5
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 3.4e-28 131.7 1229 24.0
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 7.6e-28 130.6 1162 24.0
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.4e-26 125.6 943 26.2
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 5.4e-26 124.4 1234 24.2
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.7e-25 122.1 1258 24.1
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 6.6e-24 117.5 1184 23.2
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.1e-23 116.7 1239 23.6
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.3e-23 115.2 1248 24.3
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.6e-22 112.8 1234 23.4
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 8.1e-22 110.5 1273 22.7
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.1e-21 110.2 1219 24.8
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.4e-21 109.8 100 54.0
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 4.0e-21 108.2 1228 23.0
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 9.0e-21 107.1 1221 23.8
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 1.5e-20 106.3 272 34.6
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 2.0e-20 105.9 1241 22.1
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 5.8e-20 104.4 1234 22.3
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.6e-20 104.0 1239 23.6
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 9.9e-20 103.6 1191 22.8
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 9.9e-20 103.6 1322 24.1
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 1.4e-18 99.8 1232 21.8
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 3.2e-18 98.6 1280 23.2
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.6e-17 94.7 1234 23.7
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.3e-16 93.2 1234 22.8
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.3e-16 93.2 1206 22.9
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 1.7e-16 92.8 550 25.1
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.9e-16 91.7 1339 22.6
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.9e-16 91.7 1232 22.2
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 6.6e-16 90.9 966 23.1
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 6.6e-16 90.9 1127 22.0
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 1.5e-15 89.7 1141 22.8
BcaNung04839 Brassica carinata HOM05D004021 ORTHO05D003767 3.3e-15 88.6 65 75.4
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 1.3e-14 86.7 91 46.2
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.3e-14 86.7 156 37.2
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 8.1e-14 84.0 157 35.0
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 8.1e-14 84.0 560 24.3
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 1.1e-13 83.6 89 47.2
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.4e-13 83.2 1115 23.3
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.4e-13 82.4 149 34.2
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.4e-13 82.4 576 25.2
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 3.1e-13 82.0 483 25.9
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 3.1e-13 82.0 82 46.3
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 5.3e-13 81.3 1019 24.6
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.6e-12 79.0 534 27.2
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 3.4e-12 78.6 1141 21.8
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 4.5e-12 78.2 517 24.8
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 5.8e-12 77.8 108 38.9
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 9.9e-12 77.0 487 25.5
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 9.9e-12 77.0 294 26.2
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.3e-11 76.6 85 40.0
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 2.2e-11 75.9 1124 22.9
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 2.9e-11 75.5 97 43.3
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 4.9e-11 74.7 74 41.9
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 6.4e-11 74.3 767 22.0
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 1.1e-10 73.6 68 42.6
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 2.4e-10 72.4 98 36.7
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 3.2e-10 72.0 1145 21.6
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 4.2e-10 71.6 896 22.0
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 5.4e-10 71.2 89 43.8
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.7e-09 68.9 84 40.5
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.6e-09 68.2 366 25.7
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 7.9e-09 67.4 1155 21.7
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.0e-08 67.0 366 25.4
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.8e-08 66.2 1243 21.6
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 2.3e-08 65.9 87 39.1
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 8.7e-08 63.9 1233 21.6
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.1e-07 63.5 1147 20.8
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.1e-07 63.5 75 38.7
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.1e-07 63.5 369 24.9
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 1.1e-07 63.5 271 22.5
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 1.9e-07 62.8 251 26.3
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-07 62.8 208 29.3
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.5e-07 62.4 77 41.6
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 3.3e-07 62.0 991 20.5
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 4.3e-07 61.6 148 33.8
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 7.4e-07 60.8 105 35.2
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 9.6e-07 60.5 193 30.1
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.3e-06 60.1 59 44.1
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 2.8e-06 58.9 976 22.7
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 4.8e-06 58.2 903 21.8
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.2e-06 57.8 363 25.3
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 8.1e-06 57.4 1140 21.9


User provided reference genes

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