Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 7.9e-115 417.2 216 100.0
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 7.9e-115 417.2 216 100.0
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 1.8e-114 416.0 216 99.5
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 1.5e-113 412.9 216 98.6
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 7.4e-113 410.6 216 97.7
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.7e-112 409.5 216 97.2
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.7e-112 409.5 216 97.2
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.7e-112 409.5 216 97.2
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 1.7e-112 409.5 216 97.7
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 2.2e-112 409.1 216 96.8
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 2.2e-112 409.1 216 96.8
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 2.2e-112 409.1 216 96.8
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 4.8e-112 407.9 216 97.2
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 1.1e-111 406.8 216 95.8
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.8e-111 406.0 216 95.4
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.8e-111 406.0 216 95.4
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 3.1e-111 405.2 216 95.4
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 3.1e-111 405.2 216 95.4
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 4.1e-111 404.8 216 96.3
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.6e-107 392.9 221 93.7
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.6e-107 391.7 216 91.2
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 88.9
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 87.5
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 88.0
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 88.0
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 88.4
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 88.4
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 88.0
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 88.0
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 88.4
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.4e-103 379.0 220 87.3
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 87.0
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 87.5
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 4.1e-103 378.3 216 87.5
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 5.3e-103 377.9 214 88.3
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 87.0
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 87.5
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 87.5
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 86.1
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 87.5
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 86.1
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 87.0
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 87.0
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 87.0
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 86.6
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 86.6
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 87.5
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 2.6e-102 375.6 215 87.0
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 85.6
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 86.1
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 86.6
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 86.1
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.1
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 86.1
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 85.2
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 85.6
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 86.1
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 86.6
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 86.1
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 86.1
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 85.6
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 5.0e-101 371.3 218 89.9
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 85.6
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 86.1
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 86.1
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 85.6
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 86.6
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 85.6
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 86.1
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 85.2
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 85.2
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 84.7
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 85.2
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 85.6
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 85.6
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 86.1
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 85.2
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 9.4e-100 367.1 216 85.2
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 85.2
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 84.7
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.1e-99 365.9 216 84.3
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 2.1e-99 365.9 216 85.2
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 4.7e-99 364.8 215 84.2
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 84.3
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 83.8
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 85.6
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 84.7
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 1.4e-98 363.2 216 88.4
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.4e-98 363.2 215 83.3
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 83.3
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.8e-98 362.8 227 81.9
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 84.3
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 83.8
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 84.3
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 6.7e-98 360.9 216 83.8
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 6.7e-98 360.9 221 82.4
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 8.8e-98 360.5 216 83.8
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.1e-97 360.1 215 83.7
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 1.1e-97 360.1 216 84.7
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 2.0e-97 359.4 216 81.9
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.3e-97 358.6 216 81.5
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 2.2e-96 355.9 216 81.5
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 4.8e-96 354.8 216 81.9
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 4.5e-94 348.2 217 80.6
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 3.8e-93 345.1 216 76.9
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 8.5e-93 344.0 216 81.9
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 1.1e-92 343.6 216 79.2
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 5.5e-92 341.3 199 86.9
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.2e-91 340.1 216 81.0
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 1.8e-90 336.3 221 77.8
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 3.0e-90 335.5 216 80.1
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.5e-89 333.2 216 76.4
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 2.6e-89 332.4 216 78.7
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 7.5e-89 330.9 216 77.3
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 2.2e-88 329.3 216 77.3
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 2.2e-88 329.3 216 77.3
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 8.3e-88 327.4 216 75.5
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 77.3
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 9.1e-87 323.9 216 76.4
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.0e-86 322.8 216 74.1
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 1.9e-84 316.2 214 73.8
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 6.1e-83 311.2 215 74.4
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 2.0e-81 306.2 165 90.3
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 2.6e-81 305.8 216 74.1
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 4.4e-81 305.1 165 89.1
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 2.2e-80 302.8 165 89.7
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 1.6e-78 296.6 276 59.8
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.7e-77 293.1 216 71.3
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 8.6e-77 290.8 216 70.8
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 3.3e-76 288.9 216 70.4
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 2.3e-74 282.7 203 75.4
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 3.0e-74 282.3 217 68.7
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 4.0e-74 282.0 216 68.1
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.2e-74 281.6 216 68.5
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 7.5e-73 277.7 217 67.3
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.3e-72 276.9 216 69.0
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 2.1e-67 259.6 217 65.9
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 2.1e-67 259.6 144 82.6
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.1e-67 259.6 178 78.1
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 3.6e-67 258.8 165 78.8
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 1.0e-66 257.3 353 45.6
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 1.3e-61 240.4 217 59.4
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 5.2e-58 228.4 233 55.4
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 8.9e-50 201.1 108 85.2
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 8.9e-50 201.1 108 85.2
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 7.1e-47 191.4 136 77.2
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 9.2e-47 191.0 151 62.9
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.2e-46 190.7 273 47.6
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.7e-46 189.5 213 52.1
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.1e-42 176.0 135 71.9
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 4.2e-39 165.6 114 76.3
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 4.6e-38 162.2 117 66.7
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 4.6e-38 162.2 106 74.5
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.6e-36 155.2 84 82.1
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.6e-35 153.7 81 86.4
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.1e-34 151.0 81 86.4
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 1.4e-31 140.6 101 75.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 1.4e-31 140.6 101 75.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 1.4e-31 140.6 101 75.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 1.4e-31 140.6 101 75.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 1.4e-31 140.6 101 75.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 9.6e-28 127.9 71 77.5
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.8e-19 99.0 74 75.7
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 9.0e-18 94.7 63 79.4
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.2e-16 90.1 68 73.5
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 3.1e-10 69.7 39 74.4
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.2e-09 67.8 39 71.8
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 4.5e-09 65.9 48 64.6
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 4.5e-09 65.9 48 64.6
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 4.5e-09 65.9 48 64.6
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.7e-08 63.9 48 62.5


User provided reference genes

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