Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 1.6e-85 319.3 154 100.0
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 5.7e-75 284.3 156 93.6
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 7.2e-70 267.3 157 86.6
Carub.0006s0958 Capsella rubella HOM05D008824 ORTHO05D003125 2.1e-69 265.8 166 84.9
BcaB01g05491 Brassica carinata HOM05D008824 ORTHO05D003125 5.7e-67 257.7 154 83.8
BolC3t13066H Brassica oleracea HOM05D008824 ORTHO05D003125 5.7e-67 257.7 154 83.8
BcaB01g06316 Brassica carinata HOM05D008824 ORTHO05D003125 1.3e-63 246.5 154 80.5
A03p04850 Brassica napus HOM05D008824 ORTHO05D003125 5.5e-62 241.1 154 81.8
BraA03t09824Z Brassica rapa HOM05D008824 ORTHO05D003125 5.5e-62 241.1 154 81.8
Sp6g32430 Schrenkiella parvula HOM05D008824 ORTHO05D003125 2.1e-61 239.2 154 81.2
BcaNung07098 Brassica carinata HOM05D008824 ORTHO05D003125 7.5e-59 230.7 157 77.1
C03p05580 Brassica napus HOM05D008824 ORTHO05D003125 9.8e-59 230.3 154 79.2
CARHR202220 Cardamine hirsuta HOM05D008824 ORTHO05D003125 2.4e-57 225.7 161 75.2
Aa31LG3G16070 Aethionema arabicum HOM05D008824 ORTHO05D003125 1.6e-56 223.0 157 75.2
BcaNung01909 Brassica carinata HOM05D008824 ORTHO05D003125 7.8e-56 220.7 154 76.0
BcaNung01911 Brassica carinata HOM05D008824 ORTHO05D003125 7.8e-56 220.7 154 76.0
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 2.3e-55 219.2 155 76.1
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 2.3e-55 219.2 155 76.1
BraA10t44721Z Brassica rapa HOM05D008824 ORTHO05D003125 2.3e-55 219.2 155 77.4
BcaC04g19263 Brassica carinata HOM05D008824 ORTHO05D003125 5.0e-55 218.0 155 76.1
BolC9t59401H Brassica oleracea HOM05D008824 ORTHO05D003125 5.0e-55 218.0 155 76.1
BraA02t05065Z Brassica rapa HOM05D008824 ORTHO05D003125 9.5e-54 213.8 155 74.8
BcaC03g13348 Brassica carinata HOM05D008824 ORTHO05D003125 5.6e-46 188.0 134 75.4
C02p04840 Brassica napus HOM05D008824 ORTHO05D003125 5.6e-46 188.0 134 75.4
BolC2t06442H Brassica oleracea HOM05D008824 ORTHO05D003125 2.6e-43 179.1 134 72.4
A02p00820 Brassica napus HOM05D008824 ORTHO05D003125 3.7e-42 175.3 124 74.2
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 1.4e-36 156.8 152 59.2
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 4.0e-36 155.2 152 58.6
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 4.6e-16 88.6 141 43.3
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 1.0e-15 87.4 141 42.6
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 1.9e-14 83.2 149 36.2
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 3.3e-14 82.4 149 39.6
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 5.6e-14 81.6 142 42.3
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 5.8e-11 71.6 145 39.3
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 1.1e-09 67.4 143 36.4
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 1.4e-09 67.0 143 34.3
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 4.2e-09 65.5 143 37.1
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 5.5e-09 65.1 140 33.6
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 7.1e-09 64.7 116 37.9
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 9.3e-09 64.3 143 36.4
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 4.6e-08 62.0 133 38.3
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 6.0e-08 61.6 136 36.8
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.9e-08 61.2 119 35.3
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.8e-07 60.1 149 32.2
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 2.3e-07 59.7 143 30.1
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 3.9e-07 58.9 98 38.8
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 3.9e-07 58.9 104 42.3
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.9e-07 58.9 86 39.5
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 6.7e-07 58.2 95 41.1
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 6.7e-07 58.2 153 31.4
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 6.7e-07 58.2 94 41.5
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 8.7e-07 57.8 126 34.1
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 8.7e-07 57.8 102 39.2
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 8.7e-07 57.8 128 34.4
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 1.1e-06 57.4 83 39.8
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 1.1e-06 57.4 118 39.0
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 1.5e-06 57.0 92 44.6
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 1.9e-06 56.6 101 39.6
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.9e-06 56.6 85 40.0
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.9e-06 56.6 142 30.3
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.9e-06 56.6 142 30.3
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 2.5e-06 56.2 92 41.3
Lalb_Chr24g0402081 Lupinus albus HOM05D013068 ORTHO05D003125 2.5e-06 56.2 109 35.8
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.3e-06 55.8 86 38.4
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 3.3e-06 55.8 137 32.1
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 3.3e-06 55.8 86 39.5
MELO3C030306.2 Cucumis melo HOM05D008824 ORTHO05D003125 4.3e-06 55.5 103 38.8
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 4.3e-06 55.5 136 33.1
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.3e-06 55.5 97 39.2
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.6e-06 55.1 90 43.3
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 5.6e-06 55.1 126 34.9
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 5.6e-06 55.1 60 48.3
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.6e-06 55.1 127 35.4
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.4e-06 54.7 90 42.2
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.4e-06 54.7 90 42.2
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 7.4e-06 54.7 93 38.7
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 7.4e-06 54.7 66 48.5
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 9.6e-06 54.3 145 31.0
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 9.6e-06 54.3 51 60.8
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 9.6e-06 54.3 139 34.5
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 9.6e-06 54.3 57 54.4


User provided reference genes

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