Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 2338.9 1187 100.0
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 2308.9 1187 98.6
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 2273.8 1187 97.1
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 2254.6 1188 96.2
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 2252.2 1188 96.3
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 2240.7 1188 95.9
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 2240.3 1188 95.8
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 2235.7 1188 95.6
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 2231.4 1188 95.5
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 2161.7 1189 91.8
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 2103.9 1195 91.1
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 2029.2 1193 87.3
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1872.4 1202 79.5
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1865.1 982 96.5
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1863.6 1205 78.7
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1858.6 1206 78.6
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1855.5 1199 77.8
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1844.3 1204 78.0
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1840.1 1205 77.8
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1824.7 1205 77.2
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1823.9 1205 77.2
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1816.2 1197 77.2
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1813.9 1206 76.7
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1813.1 1208 76.4
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1812.7 1204 77.2
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1804.6 1205 76.9
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1801.9 1205 76.9
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1801.2 1296 72.1
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1800.0 1204 75.6
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1799.6 1197 75.7
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1798.5 1204 75.7
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1793.9 1197 76.3
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1791.5 1220 74.9
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1790.8 1202 75.5
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1786.2 1205 74.9
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1785.8 1220 74.5
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1783.1 1207 75.0
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1775.0 1220 74.3
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1774.6 1199 74.6
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1771.9 1197 75.7
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1770.7 1205 74.9
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1765.0 1205 74.4
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1760.7 1196 75.4
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1760.3 1204 74.3
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1758.0 1201 74.1
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1755.7 1280 70.5
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1755.0 1203 74.0
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1754.6 1200 74.0
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1751.1 1205 74.3
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1749.9 1200 74.0
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1747.6 1205 73.8
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1746.1 1205 73.4
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1745.7 1197 73.7
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1742.6 1205 73.4
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1741.5 1291 70.7
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1741.5 1291 70.7
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1741.1 1198 73.6
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1733.4 1203 73.0
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1733.0 1205 73.3
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1732.2 1131 78.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1726.1 1199 72.9
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1725.3 1199 73.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1725.3 1212 73.0
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1723.0 1211 72.9
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1717.2 1194 73.5
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1714.1 1187 73.2
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1713.4 1194 73.0
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1712.6 1197 73.4
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1712.2 1196 73.4
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1711.0 1194 73.0
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1710.3 1203 73.1
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1705.6 1196 72.2
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1702.6 1202 72.3
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1701.4 1347 67.4
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1694.9 1194 72.2
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1688.3 1191 72.2
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1688.3 1194 72.4
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1675.2 1097 77.8
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1674.1 1205 71.2
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1671.4 1227 70.7
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1670.2 1195 71.7
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1641.3 1183 70.7
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1637.1 1215 69.1
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1621.7 1187 71.2
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1610.9 1211 68.5
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1605.1 1204 69.8
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1541.9 1190 67.6
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1540.4 1187 66.0
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1536.5 1015 77.9
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1514.2 1037 74.4
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1513.0 1201 64.9
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1494.6 1210 63.6
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1493.0 1047 72.8
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1493.0 1047 72.9
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1468.8 1030 74.0
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1427.9 981 74.5
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1426.0 983 74.4
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1369.8 1049 66.7
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1322.0 902 75.5
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1320.8 830 80.5
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1294.6 1213 56.9
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1267.7 929 69.5
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1210.3 867 70.0
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1205.3 1226 53.1
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1124.0 904 65.0
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1093.6 1213 51.0
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 8.1e-312 1073.5 1216 50.2
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.1e-279 967.2 1186 44.9
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 1.9e-266 923.3 1319 42.1
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.1e-249 866.7 1226 43.1
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 2.9e-243 846.3 518 83.0
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.4e-228 796.2 1136 43.1
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 4.6e-188 662.9 424 78.3
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 6.4e-150 536.2 306 85.6
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 3.3e-146 523.9 324 79.3
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.6e-146 522.3 483 59.6
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.1e-144 518.8 433 62.8
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 7.6e-143 512.7 741 43.0
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 9.0e-128 462.6 323 70.3
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 2.8e-121 441.0 349 67.0
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 4.5e-119 433.7 292 76.7
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 3.1e-112 411.0 329 66.6
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 1.1e-104 386.0 309 63.8
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.5e-94 350.1 363 52.1
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.8e-84 318.2 256 65.6
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.0e-83 316.2 285 54.7
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 1.7e-81 308.9 391 46.8
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 4.7e-60 237.7 260 50.0
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 5.2e-59 234.2 157 72.6
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 3.1e-51 208.4 116 81.9
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 2.6e-50 205.3 140 75.7
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.1e-45 189.9 116 81.0
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.9e-45 189.1 138 64.5
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.4e-43 183.0 159 57.9
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 4.0e-43 181.4 722 25.9
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 1.2e-42 179.9 145 63.4
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.9e-41 174.5 277 40.8
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.3e-36 159.8 191 49.2
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 4.2e-32 144.8 161 51.6
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 6.0e-31 141.0 86 79.1
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 9.0e-27 127.1 159 44.7
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 9.3e-24 117.1 62 93.5
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 2.6e-18 99.0 61 72.1
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.3e-17 96.7 71 66.2
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.5e-15 88.6 224 30.4
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 2.5e-13 82.4 74 68.9
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 2.5e-13 82.4 74 68.9
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 9.7e-13 80.5 80 58.8
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 1.4e-11 76.6 45 75.6
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.1e-11 75.1 49 63.3
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 4.1e-11 75.1 55 63.6
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 2.0e-10 72.8 70 55.7
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 8.5e-09 67.4 54 68.5
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 8.5e-09 67.4 38 78.9
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.9e-08 66.2 142 35.2
BcaC03g13346 Brassica carinata HOM05D004589 ORTHO05D023960 1.4e-06 60.1 48 72.9
BcaC03g13345 Brassica carinata HOM05D004589 ORTHO05D023960 3.9e-06 58.5 47 72.3


User provided reference genes

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