Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 1.7e-57 225.7 110 100.0
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 7.2e-56 220.3 110 96.4
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 2.3e-54 215.3 110 92.7
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 9.8e-53 209.9 110 92.7
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 6.3e-52 207.2 110 90.9
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 5.4e-51 204.1 110 87.3
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 5.4e-51 204.1 109 89.9
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 9.2e-51 203.4 109 87.2
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 9.2e-51 203.4 109 87.2
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 3.5e-50 201.4 109 87.2
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 3.5e-50 201.4 109 87.2
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 1.3e-49 199.5 108 88.0
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 1.3e-49 199.5 109 86.2
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.7e-49 199.1 111 86.5
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 1.7e-49 199.1 110 84.5
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 9.5e-48 193.4 110 82.7
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 2.8e-47 191.8 107 83.2
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 4.7e-47 191.0 110 83.6
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 3.7e-44 181.4 101 78.2
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 8.3e-44 180.3 101 78.2
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 1.1e-43 179.9 102 77.5
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 1.8e-43 179.1 101 78.2
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 2.4e-43 178.7 101 80.2
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 2.4e-43 178.7 101 77.2
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 3.2e-43 178.3 100 79.0
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 3.2e-43 178.3 101 78.2
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 4.1e-43 177.9 101 81.2
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 5.4e-43 177.6 101 78.2
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 9.2e-43 176.8 101 77.2
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 9.2e-43 176.8 100 80.0
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.2e-42 176.4 101 77.2
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.2e-42 176.4 101 76.2
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 1.6e-42 176.0 101 77.2
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.7e-42 175.3 100 78.0
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 3.5e-42 174.9 99 79.8
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 3.5e-42 174.9 101 75.2
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 3.5e-42 174.9 101 78.2
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 4.6e-42 174.5 101 77.2
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 6.0e-42 174.1 101 76.2
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 7.8e-42 173.7 101 76.2
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 7.8e-42 173.7 101 75.2
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 7.8e-42 173.7 100 80.0
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 7.8e-42 173.7 101 74.3
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.0e-41 173.3 100 77.0
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 1.3e-41 172.9 104 75.0
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 2.3e-41 172.2 100 78.0
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.3e-41 172.2 101 74.3
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 3.0e-41 171.8 99 79.8
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 3.0e-41 171.8 102 77.5
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 3.0e-41 171.8 101 77.2
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 5.0e-41 171.0 101 75.2
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 5.0e-41 171.0 101 74.3
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 5.0e-41 171.0 101 77.2
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 5.0e-41 171.0 101 74.3
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 5.0e-41 171.0 101 74.3
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 6.6e-41 170.6 101 73.3
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 8.6e-41 170.2 110 71.8
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 1.1e-40 169.9 101 74.3
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 1.1e-40 169.9 101 74.3
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.1e-40 169.9 101 76.2
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.1e-40 169.9 101 76.2
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.1e-40 169.9 101 76.2
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.1e-40 169.9 104 76.0
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.5e-40 169.5 110 71.8
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.5e-40 169.5 101 73.3
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 1.9e-40 169.1 101 75.2
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.5e-40 168.7 100 73.0
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 2.5e-40 168.7 101 75.2
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 3.3e-40 168.3 101 72.3
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 3.3e-40 168.3 101 74.3
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 5.6e-40 167.5 101 73.3
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 5.6e-40 167.5 100 75.0
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 5.6e-40 167.5 101 73.3
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 5.6e-40 167.5 101 73.3
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 7.3e-40 167.2 101 75.2
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 9.5e-40 166.8 101 75.2
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 9.5e-40 166.8 101 71.3
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 9.5e-40 166.8 100 73.0
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 1.2e-39 166.4 101 73.3
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.2e-39 166.4 110 70.9
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 1.6e-39 166.0 101 71.3
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 6.2e-39 164.1 100 74.0
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 6.2e-39 164.1 100 72.0
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 1.4e-38 162.9 99 73.7
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 1.4e-38 162.9 100 72.0
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 5.2e-38 161.0 100 69.0
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 6.8e-38 160.6 105 70.5
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 6.8e-38 160.6 93 76.3
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 8.9e-38 160.2 105 71.4
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.5e-37 159.5 111 65.8
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 1.5e-37 159.5 93 75.3
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 5.8e-37 157.5 92 77.2
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 7.5e-37 157.1 101 68.3
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 9.8e-37 156.8 99 69.7
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 8.3e-36 153.7 101 64.4
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 2.4e-35 152.1 93 72.0
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 2.1e-34 149.1 100 62.0
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 1.3e-33 146.4 92 68.5
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 2.3e-33 145.6 100 65.0
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 3.0e-33 145.2 76 93.4
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.9e-32 142.5 100 62.0
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 7.3e-32 140.6 100 62.0
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 3.6e-31 138.3 99 56.6
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 3.4e-29 131.7 73 82.2
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 3.4e-29 131.7 70 80.0
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 9.9e-29 130.2 83 71.1
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 6.4e-28 127.5 72 80.6
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 8.3e-28 127.1 101 48.5
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.9e-27 125.9 71 83.1
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.9e-27 125.9 72 81.9
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 5.4e-27 124.4 73 75.3
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 7.1e-27 124.0 74 75.7
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 9.2e-27 123.6 81 65.4
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 2.1e-26 122.5 74 77.0
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 2.1e-26 122.5 99 49.5
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 2.7e-26 122.1 78 74.4
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 1.5e-24 116.3 96 55.2
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.9e-24 115.9 76 65.8
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 1.6e-18 96.3 112 47.3
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 4.6e-18 94.7 64 67.2
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 8.7e-17 90.5 64 67.2
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.7e-12 76.3 54 61.1
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 1.9e-11 72.8 43 79.1
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.1e-08 63.5 40 67.5
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 1.3e-07 60.1 42 61.9
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 6.9e-06 54.3 33 72.7


User provided reference genes

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