Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 8.5e-227 790.0 409 100.0
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.1e-205 719.9 402 93.0
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 5.4e-181 637.9 402 82.3
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 5.4e-181 637.9 403 81.9
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 6.0e-180 634.4 402 82.3
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 5.6e-178 627.9 406 80.8
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 2.4e-176 622.5 410 80.5
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 4.0e-176 621.7 402 80.6
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 2.6e-167 592.4 407 77.9
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 3.4e-151 538.9 411 69.8
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 2.4e-136 489.6 309 82.8
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 2.6e-135 486.1 308 83.1
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 5.7e-130 468.4 296 80.7
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 2.4e-128 463.0 406 62.8
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 6.5e-126 454.9 286 80.1
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 1.3e-121 440.7 405 57.5
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.4e-120 436.4 414 57.5
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.5e-119 433.7 409 55.7
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 2.0e-119 433.3 291 81.1
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 4.5e-119 432.2 409 56.7
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 1.0e-118 431.0 409 56.5
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 1.7e-118 430.3 419 54.9
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.7e-118 430.3 407 57.0
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 8.5e-118 427.9 410 57.6
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.5e-117 427.2 410 57.1
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 1.5e-117 427.2 407 54.8
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 4.2e-117 425.6 413 57.6
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 7.2e-117 424.9 406 57.9
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 9.4e-117 424.5 407 54.3
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 2.1e-116 423.3 420 53.8
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 3.6e-116 422.5 418 53.8
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 1.1e-114 417.5 404 55.9
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 1.1e-114 417.5 407 56.5
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 5.7e-114 415.2 407 55.3
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 2.2e-113 413.3 414 54.8
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.1e-112 411.0 415 56.1
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 1.1e-112 411.0 409 53.5
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 1.8e-112 410.2 413 55.4
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 2.4e-112 409.8 404 55.7
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 5.3e-112 408.7 413 55.4
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 5.3e-112 408.7 409 52.6
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 1.2e-111 407.5 409 52.8
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 1.6e-111 407.1 409 52.3
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 4.5e-111 405.6 454 50.9
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 1.3e-110 404.1 413 52.3
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 5.5e-109 398.7 419 51.1
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 7.2e-109 398.3 414 52.9
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 2.1e-108 396.7 439 50.1
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 2.1e-108 396.7 362 59.1
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 4.7e-108 395.6 412 52.7
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 5.7e-106 388.7 409 51.3
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 8.3e-105 384.8 409 53.8
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 1.1e-104 384.4 415 54.2
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.8e-104 383.6 420 50.7
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 4.1e-104 382.5 257 81.7
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 5.3e-104 382.1 452 48.2
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 5.3e-104 382.1 401 52.9
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 1.0e-102 377.9 371 54.2
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.7e-102 377.1 448 48.4
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 1.1e-101 374.4 527 44.0
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.1e-101 374.4 410 52.0
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 2.5e-101 373.2 360 55.0
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 3.2e-101 372.9 482 46.3
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 5.5e-101 372.1 404 50.0
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 3.0e-99 366.3 415 50.6
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 3.7e-97 359.4 401 51.1
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 9.1e-96 354.8 428 48.6
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 5.9e-95 352.1 399 50.9
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 2.1e-92 343.6 410 50.0
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 1.5e-90 337.4 283 60.8
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 2.6e-90 336.7 413 47.7
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.7e-87 326.6 403 49.1
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 9.5e-85 318.2 402 45.5
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 1.6e-84 317.4 456 45.6
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 3.6e-84 316.2 406 45.1
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 4.0e-83 312.8 426 44.8
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.7e-81 307.4 282 57.8
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.6e-79 300.8 298 53.4
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 2.7e-79 300.1 318 53.1
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.1e-77 294.7 316 52.8
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 1.5e-77 294.3 315 52.1
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.3e-77 293.1 306 52.9
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 7.3e-77 292.0 312 53.2
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 3.6e-76 289.7 330 51.2
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 6.2e-76 288.9 422 41.0
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 6.2e-76 288.9 336 51.2
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.2e-74 284.6 312 49.4
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 1.5e-74 284.3 319 52.4
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 3.7e-73 279.6 438 41.3
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 3.2e-72 276.6 316 51.9
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 5.1e-70 269.2 572 35.3
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.1e-69 268.1 274 52.9
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 9.5e-69 265.0 444 39.9
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 1.8e-67 260.8 404 40.3
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 4.0e-67 259.6 464 37.1
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 2.0e-66 257.3 429 41.7
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 7.1e-64 248.8 420 41.7
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 9.2e-64 248.4 293 49.1
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 9.2e-64 248.4 310 49.0
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 2.3e-62 243.8 300 45.3
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.2e-57 227.3 149 73.2
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 2.5e-53 213.8 316 42.4
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 8.1e-52 208.8 260 42.7
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 2.4e-51 207.2 184 56.0
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.6e-47 194.5 312 38.1
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.1e-47 194.1 403 34.0
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 7.9e-47 192.2 288 41.0
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.8e-43 181.0 232 44.8
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 3.9e-38 163.3 383 31.6
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 5.1e-38 162.9 85 94.1
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 1.0e-33 148.7 96 70.8
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 3.8e-33 146.7 93 74.2
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.4e-32 144.8 295 36.9
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 1.2e-31 141.7 282 33.0
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 3.4e-26 123.6 79 78.5
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 3.0e-22 110.5 77 63.6
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 4.5e-18 96.7 123 42.3
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 5.9e-18 96.3 73 61.6
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 1.9e-16 91.3 93 51.6
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.2e-16 90.5 61 65.6
Sp1g28000 Schrenkiella parvula HOM05D006096 ORTHO05D007775 2.0e-13 81.3 100 50.0
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.3e-13 80.1 242 28.9
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 6.3e-12 76.3 86 46.5
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 1.4e-11 75.1 91 51.6
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.0e-09 66.6 69 49.3
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.9e-08 64.7 96 45.8
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 1.6e-07 61.6 59 61.0
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.1e-07 59.7 75 40.0
Aa31LG7G15400 Aethionema arabicum HOM05D006096 ORTHO05D009377 3.0e-06 57.4 111 41.4


User provided reference genes

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