Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.6e-104 382.1 196 100.0
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 6.1e-90 334.3 198 87.4
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 7.8e-85 317.4 198 83.8
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 5.6e-83 311.2 195 81.0
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.6e-82 309.7 196 80.6
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 5.8e-80 301.2 197 78.7
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 5.4e-78 294.7 196 77.6
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 5.4e-78 294.7 196 75.0
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 2.0e-77 292.7 196 74.5
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 2.0e-77 292.7 196 74.5
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 3.5e-77 292.0 196 75.0
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 3.9e-76 288.5 196 73.5
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 5.1e-60 235.0 197 65.5
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 9.5e-59 230.7 202 62.9
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 3.1e-57 225.7 200 61.5
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 8.9e-57 224.2 202 58.9
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 8.9e-57 224.2 198 63.6
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 2.6e-56 222.6 197 61.4
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 4.4e-56 221.9 187 64.7
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 3.8e-55 218.8 200 61.5
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 1.1e-54 217.2 199 60.3
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 1.1e-54 217.2 199 60.3
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 1.1e-54 217.2 199 60.3
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 7.8e-53 211.1 196 60.7
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 2.4e-49 199.5 185 59.5
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 8.4e-47 191.0 175 59.4
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 5.4e-38 161.8 108 74.1
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 1.1e-35 154.1 202 46.0
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 2.0e-32 143.3 88 76.1
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 2.0e-32 143.3 209 42.1
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 4.5e-32 142.1 212 42.0
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 2.2e-31 139.8 201 43.3
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 6.4e-31 138.3 201 41.8
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-30 137.5 201 43.3
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.6e-29 133.7 196 39.8
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 2.7e-29 132.9 206 41.3
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 3.5e-29 132.5 201 41.8
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 4.6e-29 132.1 182 40.1
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 6.0e-29 131.7 193 43.0
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 6.0e-29 131.7 215 40.0
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 6.0e-29 131.7 206 39.8
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 6.0e-29 131.7 196 39.8
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 7.9e-29 131.3 196 39.3
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 7.9e-29 131.3 196 39.3
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 1.0e-28 131.0 196 39.3
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 1.0e-28 131.0 196 39.3
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 3.9e-28 129.0 204 38.7
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 5.1e-28 128.6 198 41.9
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 5.1e-28 128.6 211 41.2
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.7e-28 128.3 217 37.8
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 6.7e-28 128.3 204 40.7
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 6.7e-28 128.3 196 38.3
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 6.7e-28 128.3 180 42.2
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 8.7e-28 127.9 191 39.8
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 4.3e-27 125.6 200 39.0
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 7.4e-27 124.8 218 38.5
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 7.4e-27 124.8 207 38.6
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 7.4e-27 124.8 204 39.2
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.6e-26 123.6 198 36.4
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 2.1e-26 123.2 207 37.7
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 3.7e-26 122.5 197 41.1
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 3.7e-26 122.5 202 43.6
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 4.8e-26 122.1 195 37.4
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.2e-26 121.7 207 37.2
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.1e-25 120.9 204 40.7
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.4e-25 120.6 218 36.7
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.8e-25 120.2 206 38.3
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.8e-25 120.2 206 38.3
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 3.1e-25 119.4 207 36.7
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.1e-25 119.4 205 36.1
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.9e-25 118.2 218 37.2
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 1.2e-24 117.5 163 44.2
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 1.5e-24 117.1 232 39.2
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 1.5e-24 117.1 232 39.2
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.5e-24 117.1 205 35.6
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.0e-24 116.7 208 36.1
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 5.8e-24 115.2 212 37.3
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 7.6e-24 114.8 204 37.3
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 7.6e-24 114.8 199 36.7
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.6e-24 114.8 191 38.7
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 1.3e-23 114.0 230 39.6
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.3e-23 114.0 216 34.7
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.3e-23 114.0 202 36.1
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.7e-23 113.6 205 36.6
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 3.8e-23 112.5 204 37.7
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.8e-23 112.5 212 36.8
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 3.8e-23 112.5 202 36.6
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 4.9e-23 112.1 198 37.9
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 6.5e-23 111.7 209 33.5
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 8.4e-23 111.3 210 35.7
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 8.4e-23 111.3 208 36.1
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.1e-22 110.9 205 37.1
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-22 110.9 186 37.6
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-22 110.9 186 37.6
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 1.4e-22 110.5 190 38.4
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.5e-22 109.8 186 36.6
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 5.5e-22 108.6 203 34.5
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 9.3e-22 107.8 187 34.8
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.6e-21 107.1 140 43.6
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.6e-21 107.1 179 36.3
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.1e-21 106.7 201 35.8
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 2.1e-21 106.7 200 33.0
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.0e-21 105.1 182 36.8
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 7.9e-21 104.8 203 36.0
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 7.9e-21 104.8 189 36.5
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.8e-20 103.6 193 35.2
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 2.3e-20 103.2 184 34.8
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 2.3e-20 103.2 208 33.7
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 5.1e-20 102.1 199 33.2
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.1e-20 102.1 151 40.4
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 5.1e-20 102.1 199 32.7
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 5.1e-20 102.1 167 36.5
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 6.7e-20 101.7 151 39.7
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.5e-19 100.5 151 40.4
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 1.9e-19 100.1 173 38.2
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.9e-19 100.1 199 31.7
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.9e-19 100.1 199 31.7
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.9e-19 100.1 202 35.1
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 3.3e-19 99.4 181 34.3
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.3e-19 99.4 184 34.8
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 4.3e-19 99.0 213 32.9
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 5.7e-19 98.6 193 34.7
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 1.3e-18 97.4 202 34.2
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 1.3e-18 97.4 192 35.4
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 2.2e-18 96.7 136 40.4
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 2.2e-18 96.7 199 30.7
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 2.8e-18 96.3 201 33.3
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 2.8e-18 96.3 197 34.5
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 2.8e-18 96.3 196 30.6
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 3.7e-18 95.9 202 34.2
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 3.7e-18 95.9 183 35.0
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 4.8e-18 95.5 191 36.6
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 4.8e-18 95.5 121 43.0
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 4.8e-18 95.5 109 48.6
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 6.3e-18 95.1 199 30.2
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 6.3e-18 95.1 192 34.4
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 6.3e-18 95.1 195 31.8
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-17 94.4 182 33.5
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 1.4e-17 94.0 191 36.1
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 1.4e-17 94.0 202 34.2
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 1.8e-17 93.6 199 35.7
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 1.8e-17 93.6 184 32.6
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 1.8e-17 93.6 121 41.3
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 2.4e-17 93.2 125 42.4
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 2.4e-17 93.2 195 31.3
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 3.1e-17 92.8 193 30.1
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 4.1e-17 92.4 195 32.3
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 5.3e-17 92.0 205 30.7
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 5.3e-17 92.0 202 30.2
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 6.9e-17 91.7 200 34.0
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 6.9e-17 91.7 118 40.7
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 6.9e-17 91.7 121 40.5
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 6.9e-17 91.7 192 31.2
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 1.2e-16 90.9 125 40.0
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 1.5e-16 90.5 163 31.9
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.6e-16 89.7 154 35.1
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 3.4e-16 89.4 196 33.7
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 3.4e-16 89.4 193 31.6
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 3.4e-16 89.4 169 32.5
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 5.9e-16 88.6 187 34.8
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 7.7e-16 88.2 135 37.8
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 1.0e-15 87.8 121 38.0
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 6.5e-15 85.1 137 35.0
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.4e-14 84.0 120 38.3
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 5.5e-14 82.0 211 32.7
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 7.2e-14 81.6 214 34.6
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 7.2e-14 81.6 156 30.8
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.2e-14 81.6 132 36.4
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.4e-12 77.4 206 33.0
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 2.3e-12 76.6 169 30.8
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-12 75.9 134 37.3
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 1.5e-11 73.9 84 45.2
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 1.4e-09 67.4 90 36.7
SEGI_26050 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 5.3e-09 65.5 153 34.0
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.5e-08 63.9 130 33.8
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 2.0e-08 63.5 121 34.7
SEGI_10997 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 2.0e-08 63.5 159 28.9
SEGI_25558 Sequoiadendron giganteum HOM05D002590 ORTHO05D002763 2.0e-08 63.5 159 28.9
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.9e-08 62.0 136 33.8
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.7e-08 61.6 136 30.1
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 1.1e-06 57.8 130 36.9
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.1e-06 57.8 136 31.6
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 1.1e-06 57.8 135 30.4
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 5.5e-06 55.5 131 31.3


User provided reference genes

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