Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 5.8e-178 627.5 324 100.0
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.3e-145 520.0 326 84.4
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 9.1e-115 417.5 326 70.2
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 5.7e-109 398.3 351 65.5
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.2e-100 369.8 326 63.5
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.1e-88 330.9 325 61.5
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 1.9e-80 303.5 326 57.7
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 1.9e-80 303.5 326 57.7
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 8.0e-79 298.1 326 56.4
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 5.2e-78 295.4 326 55.8
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.5e-74 282.7 359 49.0
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.3e-73 280.8 360 48.9
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.6e-71 273.9 339 49.9
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 6.0e-66 255.4 338 47.3
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 8.6e-65 251.5 330 50.6
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.5e-64 250.0 343 48.4
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-62 244.2 332 48.2
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 2.0e-61 240.4 332 47.9
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 5.8e-61 238.8 332 47.9
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 5.8e-61 238.8 332 47.9
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 5.8e-61 238.8 332 47.9
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.8e-60 236.1 327 48.9
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 6.0e-58 228.8 339 47.2
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 3.0e-57 226.5 329 47.7
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 3.1e-54 216.5 334 46.4
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 7.6e-53 211.8 328 44.8
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 3.8e-52 209.5 339 45.4
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 4.9e-52 209.1 331 46.2
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 8.4e-52 208.4 339 45.1
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 3.2e-51 206.5 339 44.8
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.2e-44 183.7 278 45.7
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 2.5e-40 170.2 306 38.6
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 7.4e-40 168.7 303 44.6
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 4.8e-39 166.0 356 36.2
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 6.2e-39 165.6 359 36.5
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 8.1e-39 165.2 314 36.9
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.1e-38 164.9 356 36.5
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.0e-36 158.3 319 37.6
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.7e-36 157.5 308 38.3
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.7e-36 157.5 308 38.3
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 8.4e-36 155.2 351 34.2
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.4e-35 154.5 312 35.6
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.5e-35 153.7 364 33.2
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 5.5e-35 152.5 319 33.9
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.6e-34 151.0 359 32.6
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 4.6e-34 149.4 331 34.4
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 6.0e-34 149.1 348 34.2
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 6.0e-34 149.1 355 34.4
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.8e-33 147.5 346 33.5
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.8e-33 147.5 144 50.7
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 5.1e-33 146.0 365 33.4
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 5.7e-32 142.5 147 48.3
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 5.7e-32 142.5 375 33.1
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 6.2e-31 139.0 357 33.6
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 2.4e-30 137.1 365 33.2
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 4.1e-30 136.3 174 44.3
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 6.9e-30 135.6 364 32.7
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 6.9e-30 135.6 366 33.3
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.5e-29 134.4 364 31.6
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.5e-29 134.4 373 31.6
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.5e-29 134.4 374 31.0
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 2.6e-29 133.7 379 31.7
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.4e-29 133.3 354 33.6
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.4e-29 133.3 354 33.3
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 4.5e-29 132.9 356 30.1
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 5.8e-29 132.5 145 51.7
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 7.6e-29 132.1 144 45.8
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.3e-28 131.3 294 33.7
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.7e-28 131.0 355 33.5
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.7e-28 131.0 354 33.3
BcaNung06448 Brassica carinata HOM05D005306 ORTHO05D006158 2.9e-28 130.2 194 49.5
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 3.8e-28 129.8 349 31.5
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 1.4e-27 127.9 362 31.2
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.5e-27 127.1 142 45.1
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 3.2e-27 126.7 338 31.7
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 4.2e-27 126.3 162 42.6
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 5.5e-27 125.9 363 32.5
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 5.5e-27 125.9 186 39.2
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 9.3e-27 125.2 376 29.0
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.2e-26 124.8 350 31.4
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 2.1e-26 124.0 365 29.3
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 1.3e-25 121.3 323 30.7
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 3.9e-25 119.8 299 32.4
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.1e-24 118.2 153 44.4
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.1e-24 118.2 153 44.4
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.5e-24 117.1 367 31.6
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 4.3e-24 116.3 322 30.4
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 7.4e-24 115.5 334 30.8
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 2.2e-23 114.0 315 32.1
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 2.8e-23 113.6 142 42.3
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 3.7e-23 113.2 178 41.0
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.7e-23 113.2 335 33.1
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 6.3e-23 112.5 366 30.3
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 2.4e-22 110.5 335 29.6
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 9.0e-22 108.6 329 30.7
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 3.4e-21 106.7 144 38.2
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.0e-20 105.1 153 41.2
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.7e-20 104.4 312 30.4
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.7e-20 104.4 113 44.2
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 2.9e-20 103.6 141 39.7
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 3.8e-20 103.2 365 26.3
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 5.0e-20 102.8 318 30.2
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 8.5e-20 102.1 351 28.8
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 8.5e-20 102.1 340 30.0
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.1e-19 101.7 360 26.9
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.1e-19 101.7 362 26.8
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.9e-19 100.9 158 36.1
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 2.5e-19 100.5 313 30.4
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 4.2e-19 99.8 357 26.3
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 5.5e-19 99.4 319 30.7
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 7.2e-19 99.0 355 27.6
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 2.1e-18 97.4 349 28.7
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 2.1e-18 97.4 152 37.5
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 2.7e-18 97.1 321 30.5
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 4.6e-18 96.3 126 40.5
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 1.4e-17 94.7 152 36.8
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 1.8e-17 94.4 310 30.3
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 2.3e-17 94.0 309 27.5
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 2.3e-17 94.0 320 29.1
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 3.0e-17 93.6 358 28.5
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.0e-16 90.9 322 28.3
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 4.3e-16 89.7 111 42.3
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.3e-15 88.2 304 31.2
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.2e-15 87.4 122 42.6
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 6.3e-15 85.9 269 26.8
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 1.1e-14 85.1 91 51.6
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.8e-14 84.3 151 39.7
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 9.1e-14 82.0 333 29.4
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.5e-13 81.3 317 27.1
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 3.4e-13 80.1 86 45.3
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 2.9e-12 77.0 313 28.4
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.1e-11 75.1 277 29.6
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 7.9e-10 68.9 121 38.8
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-09 68.2 140 35.0
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 3.3e-08 63.5 306 29.1
BcaC05g28701 Brassica carinata HOM05D005306 ORTHO05D006158 5.7e-08 62.8 68 52.9
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 9.7e-08 62.0 302 25.8
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 1.8e-06 57.8 115 35.7
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 3.1e-06 57.0 98 31.6
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.1e-06 57.0 313 24.3
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 9.1e-06 55.5 102 33.3


User provided reference genes

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