Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.2e-52 209.5 104 100.0
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 8.4e-46 186.8 99 92.9
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-38 162.9 104 79.8
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 5.6e-34 147.5 104 76.0
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 2.0e-31 139.0 106 73.6
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 2.0e-31 139.0 106 73.6
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 7.6e-31 137.1 105 73.3
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 2.5e-21 105.5 105 59.0
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-20 103.2 90 63.3
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 1.2e-20 103.2 90 63.3
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 2.1e-20 102.4 90 62.2
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 1.0e-19 100.1 90 60.0
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.6e-17 92.8 104 52.9
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 6.9e-16 87.4 104 52.9
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.2e-15 86.7 110 53.6
Carub.0006s0822 Capsella rubella HOM05D004540 ORTHO05D004852 2.0e-15 85.9 101 54.5
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.5e-15 84.7 111 53.2
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.0e-14 83.6 100 53.0
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 1.3e-14 83.2 105 51.4
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 3.8e-14 81.6 105 49.5
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 1.4e-13 79.7 46 84.8
BcaB01g05659 Brassica carinata HOM05D004540 ORTHO05D004852 7.2e-13 77.4 46 82.6
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 7.2e-13 77.4 104 49.0
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 7.2e-13 77.4 104 49.0
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 7.2e-13 77.4 104 49.0
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 9.4e-13 77.0 105 50.5
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-12 76.6 111 50.5
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 2.7e-12 75.5 105 46.7
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 4.6e-12 74.7 93 52.7
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 4.6e-12 74.7 85 55.3
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 4.6e-12 74.7 93 52.7
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 4.6e-12 74.7 93 52.7
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 4.6e-12 74.7 93 52.7
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 4.6e-12 74.7 98 46.9
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 3.9e-11 71.6 106 47.2
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 3.9e-11 71.6 106 47.2
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 3.9e-11 71.6 106 47.2
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 6.7e-11 70.9 97 46.4
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 1.1e-10 70.1 79 57.0
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 5.7e-10 67.8 88 40.9
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 9.7e-10 67.0 91 40.7
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 8.2e-09 63.9 88 43.2
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.4e-08 63.2 90 42.2
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.4e-08 62.4 84 42.9
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.4e-08 62.4 82 43.9
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 4.1e-08 61.6 88 46.6
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.1e-08 61.6 82 45.1
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.1e-08 61.6 94 42.6
BcaB05g21528 Brassica carinata HOM05D004540 ORTHO05D004852 6.9e-08 60.8 108 43.5
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 1.2e-07 60.1 37 81.1
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.2e-07 60.1 87 40.2
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.5e-07 59.7 89 38.2
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.4e-07 58.5 91 39.6
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 3.4e-07 58.5 88 37.5
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.9e-07 57.8 88 38.6
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.9e-07 57.8 88 38.6
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 5.9e-07 57.8 88 38.6
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 7.7e-07 57.4 83 38.6
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 7.7e-07 57.4 83 38.6
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 7.7e-07 57.4 83 38.6
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.0e-06 57.0 86 41.9
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.0e-06 57.0 93 36.6
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.0e-06 57.0 80 41.2
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.3e-06 56.6 80 37.5
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-06 56.2 81 39.5
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.7e-06 56.2 81 39.5
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 2.2e-06 55.8 80 37.5
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 2.2e-06 55.8 80 37.5
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 2.2e-06 55.8 86 43.0
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.2e-06 55.8 80 36.2
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 2.2e-06 55.8 89 40.4
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 3.8e-06 55.1 80 36.2
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.8e-06 55.1 80 36.2
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 5.0e-06 54.7 78 38.5
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 5.0e-06 54.7 78 38.5
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 5.0e-06 54.7 80 37.5
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 5.0e-06 54.7 90 35.6
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 5.0e-06 54.7 81 38.3
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 6.5e-06 54.3 81 40.7
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 6.5e-06 54.3 90 35.6
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.5e-06 54.3 97 40.2
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.5e-06 53.9 97 40.2
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 8.5e-06 53.9 97 40.2
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 8.5e-06 53.9 80 36.2


User provided reference genes

Program Settings