Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 3.3e-33 144.4 72 100.0
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 1.4e-31 139.0 72 94.4
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 1.8e-31 138.7 72 95.8
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 3.8e-29 131.0 72 94.4
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 1.1e-28 129.4 71 90.1
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 7.1e-28 126.7 72 88.9
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 7.1e-28 126.7 72 88.9
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 7.1e-28 126.7 72 88.9
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 1.2e-27 125.9 72 87.5
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 1.3e-26 122.5 72 84.7
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 1.9e-25 118.6 62 93.5
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 1.6e-24 115.5 72 80.6
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 8.2e-24 113.2 72 77.8
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 5.8e-22 107.1 55 90.9
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 1.3e-21 105.9 70 80.0
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 3.2e-20 101.3 70 77.1
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 1.6e-19 99.0 71 78.9
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 2.1e-19 98.6 62 77.4
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 7.9e-19 96.7 55 80.0
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 7.9e-19 96.7 54 83.3
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 2.3e-18 95.1 63 74.6
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 3.9e-18 94.4 51 80.4
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 3.9e-18 94.4 51 80.4
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 3.9e-18 94.4 51 80.4
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 3.9e-18 94.4 55 76.4
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 5.1e-18 94.0 53 77.4
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 5.1e-18 94.0 54 81.5
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 5.1e-18 94.0 55 76.4
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 5.1e-18 94.0 53 81.1
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 6.7e-18 93.6 51 82.4
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 8.7e-18 93.2 67 70.1
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 8.7e-18 93.2 63 73.0
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 1.1e-17 92.8 50 80.0
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 1.9e-17 92.0 51 80.4
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 1.9e-17 92.0 55 74.5
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 1.9e-17 92.0 52 80.8
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 2.5e-17 91.7 63 71.4
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 2.5e-17 91.7 60 75.0
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 2.5e-17 91.7 58 72.4
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 3.3e-17 91.3 54 77.8
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 4.3e-17 90.9 51 80.4
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 4.3e-17 90.9 54 75.9
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 5.7e-17 90.5 58 74.1
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 5.7e-17 90.5 53 75.5
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 5.7e-17 90.5 54 75.9
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 9.7e-17 89.7 54 74.1
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 9.7e-17 89.7 54 74.1
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 1.3e-16 89.4 51 78.4
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.3e-16 89.4 59 69.5
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 1.3e-16 89.4 62 64.5
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 1.3e-16 89.4 50 78.0
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 1.3e-16 89.4 51 74.5
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 2.2e-16 88.6 53 75.5
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 2.2e-16 88.6 55 74.5
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 2.2e-16 88.6 55 74.5
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 2.2e-16 88.6 55 70.9
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 2.8e-16 88.2 51 78.4
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 2.8e-16 88.2 51 78.4
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 2.8e-16 88.2 51 80.4
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 3.7e-16 87.8 50 78.0
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 3.7e-16 87.8 53 75.5
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 3.7e-16 87.8 57 71.9
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 4.8e-16 87.4 51 76.5
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 4.8e-16 87.4 51 78.4
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 8.2e-16 86.7 54 70.4
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 1.4e-15 85.9 54 72.2
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 3.4e-14 81.3 49 71.4
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 4.5e-14 80.9 51 72.5
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 5.9e-14 80.5 54 68.5
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 5.9e-14 80.5 48 79.2
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 5.9e-14 80.5 41 85.4
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 7.7e-14 80.1 41 85.4
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.0e-13 79.7 42 83.3
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 1.7e-13 79.0 48 70.8
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.2e-13 78.6 46 71.7
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 2.9e-13 78.2 41 82.9
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 3.8e-13 77.8 41 80.5
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 3.8e-13 77.8 41 80.5
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 3.8e-13 77.8 61 57.4
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 8.5e-13 76.6 41 80.5
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 1.9e-12 75.5 44 72.7
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 5.5e-12 73.9 42 73.8
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 1.2e-11 72.8 41 75.6
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 1.6e-11 72.4 56 64.3
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 2.1e-11 72.0 45 64.4
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 3.6e-11 71.2 39 79.5
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 5.1e-10 67.4 40 67.5
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 5.1e-10 67.4 40 67.5
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 2.5e-09 65.1 52 59.6
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 2.8e-08 61.6 34 79.4
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 1.2e-06 56.2 38 65.8
CBR_g21252 Chara braunii HOM05D007733 ORTHO05D009786 4.5e-06 54.3 65 44.6
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 4.5e-06 54.3 51 56.9


User provided reference genes

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