Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 0.0e+00 1341.6 723 100.0
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 0.0e+00 1266.9 724 91.3
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 0.0e+00 1208.0 733 86.6
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 0.0e+00 1204.1 727 86.7
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 0.0e+00 1120.9 741 81.1
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 0.0e+00 1114.8 728 81.0
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 0.0e+00 1111.7 728 81.3
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 0.0e+00 1105.9 729 81.2
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 0.0e+00 1105.1 728 80.6
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 0.0e+00 1103.2 726 79.2
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 0.0e+00 1095.9 726 78.7
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 0.0e+00 1090.9 728 79.5
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 2.2e-310 1068.5 726 77.1
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 6.4e-310 1067.0 772 74.0
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 1.6e-308 1062.4 726 76.9
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.5e-271 939.5 731 68.0
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 5.0e-246 854.7 486 88.9
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.5e-221 773.5 741 55.3
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 2.9e-214 749.2 744 54.3
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 4.7e-212 741.9 731 54.0
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 4.9e-209 731.9 752 53.7
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 9.2e-208 727.6 737 53.3
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 7.8e-207 724.5 742 53.6
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 5.0e-206 721.8 729 54.3
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 9.5e-205 717.6 747 52.3
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 5.2e-203 711.8 743 52.9
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 6.8e-203 711.4 738 52.8
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 2.0e-199 699.9 752 51.6
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.0e-198 697.6 739 53.2
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 3.0e-198 696.0 732 50.8
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.9e-197 693.3 730 51.4
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.9e-197 693.3 742 52.4
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.5e-197 693.0 742 52.2
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 3.3e-197 692.6 730 51.2
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 3.6e-196 689.1 751 51.8
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 8.1e-196 688.0 738 51.2
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 4.0e-195 685.6 738 51.2
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 5.2e-195 685.3 738 50.7
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 5.2e-195 685.3 740 51.8
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 8.9e-195 684.5 728 51.8
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 7.5e-194 681.4 727 52.4
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.1e-192 677.6 740 50.8
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.9e-192 676.8 732 51.2
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.0e-190 671.0 731 51.2
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.0e-190 671.0 737 52.4
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.9e-190 669.1 737 50.7
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 8.6e-190 667.9 745 49.9
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.1e-189 667.5 728 51.2
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 9.5e-189 664.5 727 49.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.6e-188 663.7 738 49.2
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.6e-188 663.7 733 49.9
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 3.6e-188 662.5 745 49.0
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 4.7e-188 662.1 740 50.8
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 6.2e-188 661.8 735 49.9
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.8e-187 660.2 730 50.1
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 2.0e-186 656.8 770 47.4
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 4.4e-186 655.6 727 49.9
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 5.8e-186 655.2 726 52.2
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 8.4e-185 651.4 738 50.0
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 7.1e-184 648.3 735 49.7
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 2.3e-182 643.3 728 48.8
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 8.6e-182 641.3 727 49.2
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.1e-179 634.4 731 48.6
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.8e-179 633.6 728 48.6
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 8.9e-179 631.3 730 47.9
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 3.4e-178 629.4 725 49.0
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 5.8e-178 628.6 758 48.8
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.3e-177 627.5 728 48.4
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.8e-177 625.9 728 48.5
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 1.1e-176 624.4 723 48.7
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.1e-176 624.4 731 48.2
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.9e-176 623.6 732 48.0
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.6e-175 620.5 750 48.0
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 7.8e-175 618.2 766 45.8
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.9e-173 613.6 728 47.9
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 3.3e-173 612.8 737 48.2
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.1e-171 607.8 723 46.3
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.8e-171 607.1 731 51.2
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 6.9e-171 605.1 730 46.4
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 5.8e-170 602.1 755 47.0
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 9.9e-170 601.3 720 47.2
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 6.4e-169 598.6 731 46.2
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.4e-168 597.4 719 50.1
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.2e-167 594.3 754 47.9
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.2e-167 594.3 729 46.1
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.3e-166 590.9 743 46.6
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 2.3e-166 590.1 731 50.3
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 7.4e-165 585.1 726 45.9
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 2.8e-164 583.2 648 51.2
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 4.8e-164 582.4 731 50.1
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 8.1e-164 581.6 735 49.5
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.4e-163 580.9 740 45.1
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.8e-163 580.5 732 45.5
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 4.0e-163 579.3 641 50.9
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.0e-162 577.0 683 48.2
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 4.6e-159 565.8 641 48.8
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 2.3e-158 563.5 728 46.7
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.9e-157 560.5 689 46.7
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 3.7e-156 556.2 657 47.0
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 4.8e-156 555.8 738 45.9
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.4e-155 554.3 739 44.0
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 3.1e-155 553.1 730 44.2
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.3e-153 547.7 726 43.0
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 7.9e-151 538.5 649 47.0
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 1.5e-149 534.3 690 44.3
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 4.1e-147 526.2 726 42.7
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.1e-143 513.8 642 46.9
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 7.4e-141 505.4 728 43.1
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 2.2e-137 493.8 817 39.9
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.9e-136 490.7 550 50.4
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 2.5e-136 490.3 680 43.7
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 2.3e-134 483.8 579 48.2
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.2e-130 471.5 693 41.4
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 6.7e-126 455.7 678 40.1
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 1.3e-121 441.4 769 37.1
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.0e-105 388.7 745 36.2
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 2.1e-103 380.9 823 33.4
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.1e-103 380.9 780 35.8
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 4.7e-103 379.8 728 36.0
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 6.1e-103 379.4 757 37.8
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 5.0e-81 306.6 647 32.8
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 4.4e-77 293.5 482 37.1
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 7.8e-74 282.7 498 36.5
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.7e-71 273.5 503 35.8
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.9e-65 253.8 127 96.1
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 5.4e-59 233.4 457 34.4
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 3.0e-57 227.6 693 28.9
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 2.3e-41 174.9 323 32.5
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.4e-38 164.9 151 54.3
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.0e-37 161.8 222 40.1
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.0e-36 159.5 209 43.1
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.2e-36 158.3 159 52.2
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.5e-32 144.8 212 39.6
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 9.7e-32 142.9 95 69.5
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 2.0e-29 135.2 98 70.4
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 3.6e-26 124.4 149 47.0
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 6.1e-26 123.6 95 64.2
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 8.5e-20 103.2 141 39.7
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 3.9e-17 94.4 92 53.3
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 6.3e-15 87.0 123 38.2
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 2.9e-12 78.2 438 24.2
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 5.0e-12 77.4 74 54.1
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 9.4e-11 73.2 279 28.0
PSO063G1518 Papaver somniferum HOM05D001312 ORTHO05D001832 9.7e-08 63.2 193 28.5
Ciclev10014022m.g Citrus clementina HOM05D001439 ORTHO05D002726 1.7e-07 62.4 129 33.3
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 1.7e-07 62.4 173 28.9
Rhsim02G0134900 Rhododendron simsii HOM05D001439 ORTHO05D002726 6.3e-07 60.5 148 31.8
VMungo0540G1437 Vigna mungo HOM05D001439 ORTHO05D002726 8.2e-07 60.1 122 32.8
unitig_27.g24975 Utricularia gibba HOM05D001439 ORTHO05D002726 1.1e-06 59.7 81 43.2
Nitab4.5_0004926g0010 Nicotiana tabacum HOM05D001312 ORTHO05D001832 1.8e-06 58.9 193 27.5
TAR626G0101 Trochodendron aralioides HOM05D001439 ORTHO05D002726 1.8e-06 58.9 92 38.0
HanXRQChr17g0554611 Helianthus annuus HOM05D001439 ORTHO05D002726 2.4e-06 58.5 95 36.8
Potri.017G016200 Populus trichocarpa HOM05D001439 ORTHO05D002726 2.4e-06 58.5 93 40.9
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 2.4e-06 58.5 121 35.5
Dinv17354 Davidia involucrata HOM05D001439 ORTHO05D002726 3.1e-06 58.2 99 39.4
Lalb_Chr20g0121581 Lupinus albus HOM05D001439 ORTHO05D002726 3.1e-06 58.2 161 29.8
Sabra17G0012700 Salix brachista HOM05D001439 ORTHO05D002726 3.1e-06 58.2 94 40.4
Lj6g0010323 Lotus japonicus HOM05D001439 ORTHO05D002726 4.1e-06 57.8 138 31.9
Mapoly0005s0159 Marchantia polymorpha HOM05D001439 ORTHO05D002726 4.1e-06 57.8 76 44.7
Psat7g116080 Pisum sativum HOM05D001439 ORTHO05D002726 4.1e-06 57.8 108 37.0
Sabra07G0109800 Salix brachista HOM05D001439 ORTHO05D002726 4.1e-06 57.8 93 38.7
Oeu056520.3 Olea europaea HOM05D001439 ORTHO05D002726 5.3e-06 57.4 95 40.0
Actinidia26141 Actinidia chinensis HOM05D001439 ORTHO05D002726 7.0e-06 57.0 137 31.4
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 7.0e-06 57.0 152 31.6
CAN.G209.1 Capsicum annuum HOM05D001439 ORTHO05D002726 7.0e-06 57.0 120 34.2
Ca_18589_v3 Cicer arietinum L. HOM05D001439 ORTHO05D002726 7.0e-06 57.0 108 37.0
SEGI_30380 Sequoiadendron giganteum HOM05D001439 ORTHO05D002726 7.0e-06 57.0 109 33.9
Solyc07g053610.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 7.0e-06 57.0 107 34.6
vmacro12346 Vaccinium macrocarpon HOM05D001439 ORTHO05D002726 7.0e-06 57.0 111 35.1
Actinidia07602 Actinidia chinensis HOM05D001439 ORTHO05D002726 9.1e-06 56.6 137 31.4
Eucgr.D00596 Eucalyptus grandis HOM05D001439 ORTHO05D002726 9.1e-06 56.6 96 39.6
Phvul.006G182000 Phaseolus vulgaris HOM05D001439 ORTHO05D002726 9.1e-06 56.6 122 32.8
Pp3c16_15110 Physcomitrium patens HOM05D001439 ORTHO05D002726 9.1e-06 56.6 100 32.0
Pp3c16_15118 Physcomitrium patens HOM05D001439 ORTHO05D002726 9.1e-06 56.6 100 32.0
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 9.1e-06 56.6 200 27.5


User provided reference genes

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