Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 0.0e+00 1139.4 558 100.0
AL6G19030 Arabidopsis lyrata HOM05D001670 ORTHO05D038644 3.9e-190 668.7 363 91.7
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.8e-102 375.6 220 86.8
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.8e-102 375.6 220 86.8
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 4.4e-101 372.9 220 86.4
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 3.2e-99 366.7 220 85.0
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 3.0e-97 360.1 223 82.5
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 4.0e-94 349.7 223 81.2
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 1.3e-92 344.7 223 78.5
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.9e-92 342.8 225 79.1
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 8.4e-92 342.0 223 77.6
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 8.4e-92 342.0 224 77.7
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-91 341.3 223 78.0
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 7.1e-91 339.0 224 77.7
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.5e-88 330.5 221 80.1
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 2.8e-87 327.0 220 77.3
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.8e-86 324.3 221 74.7
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 9.0e-86 322.0 220 75.0
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 2.0e-85 320.9 220 74.1
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.6e-85 318.9 221 73.3
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 9.9e-85 318.5 220 74.1
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 9.9e-85 318.5 220 74.1
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 9.9e-85 318.5 220 74.1
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 9.9e-85 318.5 220 74.5
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.7e-84 317.8 220 73.2
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 1.7e-84 317.8 220 73.2
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.2e-84 317.4 220 74.1
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.9e-84 316.2 220 73.2
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 6.4e-84 315.8 221 72.4
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 4.2e-83 313.2 220 74.1
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 7.1e-83 312.4 220 72.3
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 7.1e-83 312.4 220 72.7
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 7.1e-83 312.4 220 72.7
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 9.3e-83 312.0 221 72.9
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 2.7e-82 310.5 220 71.8
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 1.3e-81 308.1 218 72.5
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 3.0e-81 307.0 220 69.5
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 3.9e-81 306.6 214 71.5
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 6.6e-81 305.8 220 69.1
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 8.7e-81 305.4 214 71.0
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 4.3e-80 303.1 219 70.8
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 5.6e-80 302.8 214 69.6
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 7.3e-80 302.4 214 70.6
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 9.6e-80 302.0 214 72.0
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.6e-79 301.2 214 70.1
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 1.6e-79 301.2 218 68.8
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 2.1e-79 300.8 213 71.4
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 6.2e-79 299.3 214 70.1
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 8.1e-79 298.9 209 71.3
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 8.1e-79 298.9 218 69.7
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 1.4e-78 298.1 208 71.6
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 2.4e-78 297.4 209 70.8
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 2.4e-78 297.4 218 67.9
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 3.1e-78 297.0 218 68.8
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 5.3e-78 296.2 213 70.9
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 5.3e-78 296.2 214 69.6
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 6.9e-78 295.8 214 69.2
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 9.0e-78 295.4 218 68.3
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 9.0e-78 295.4 218 68.3
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 1.5e-77 294.7 217 67.7
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 2.6e-77 293.9 220 67.3
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 3.4e-77 293.5 220 65.0
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 4.5e-77 293.1 225 66.2
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 5.8e-77 292.7 217 69.1
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 7.6e-77 292.4 213 70.9
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 9.9e-77 292.0 214 67.8
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 1.3e-76 291.6 207 68.6
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.2e-76 290.8 214 71.0
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 2.2e-76 290.8 213 68.5
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.2e-76 290.8 213 68.1
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.2e-76 290.8 213 68.1
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.2e-76 290.8 213 68.1
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 2.2e-76 290.8 220 65.0
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 2.9e-76 290.4 213 69.5
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 2.9e-76 290.4 222 64.4
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.8e-76 290.0 217 66.8
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 3.8e-76 290.0 224 67.4
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 3.8e-76 290.0 222 67.1
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 6.4e-76 289.3 220 65.0
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 8.4e-76 288.9 226 66.4
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 8.4e-76 288.9 226 66.4
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 8.4e-76 288.9 226 66.4
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 8.4e-76 288.9 214 67.3
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 8.4e-76 288.9 219 66.7
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 8.4e-76 288.9 218 67.4
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 1.1e-75 288.5 216 68.1
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 1.1e-75 288.5 209 70.3
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.4e-75 288.1 226 66.4
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 2.4e-75 287.3 213 67.6
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 3.2e-75 287.0 218 68.3
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 4.2e-75 286.6 214 68.2
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 4.2e-75 286.6 220 67.3
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 5.5e-75 286.2 209 70.3
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 5.5e-75 286.2 219 67.6
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 7.1e-75 285.8 218 66.1
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 7.1e-75 285.8 221 66.5
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 7.1e-75 285.8 224 64.7
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 7.1e-75 285.8 217 67.7
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.2e-74 285.0 209 68.4
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 1.6e-74 284.6 209 67.5
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 2.7e-74 283.9 220 65.5
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 3.5e-74 283.5 216 67.1
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.3e-73 281.6 219 67.6
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 1.3e-73 281.6 209 67.9
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 1.8e-73 281.2 228 64.9
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 2.3e-73 280.8 219 67.1
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 3.9e-73 280.0 217 67.3
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 5.1e-73 279.6 209 64.6
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 8.7e-73 278.9 223 65.0
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 1.1e-72 278.5 220 64.1
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.5e-72 278.1 229 63.8
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.5e-72 278.1 234 62.8
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.9e-72 277.7 223 65.0
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 4.3e-72 276.6 229 63.8
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 5.6e-72 276.2 219 65.8
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 2.1e-71 274.2 209 66.5
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 3.7e-71 273.5 215 64.7
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 4.8e-71 273.1 218 66.1
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 4.8e-71 273.1 213 68.5
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 3.1e-70 270.4 213 64.3
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 3.1e-70 270.4 239 62.3
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 5.3e-70 269.6 181 73.5
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 5.3e-70 269.6 215 63.3
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.6e-69 267.3 213 62.9
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 6.5e-68 262.7 218 62.8
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.1e-67 261.9 220 62.3
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 5.5e-67 259.6 218 59.6
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 1.5e-64 251.5 218 60.6
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 8.2e-63 245.7 210 59.5
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.4e-62 245.0 233 62.2
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 6.9e-62 242.7 213 62.0
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 2.0e-61 241.1 224 57.6
BcaC07g41470 Brassica carinata HOM05D001670 ORTHO05D038644 1.2e-58 231.9 224 54.0
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 1.3e-57 228.4 157 69.4
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 6.7e-57 226.1 158 68.4
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 6.5e-52 209.5 226 54.9
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.4e-46 191.8 178 50.6
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 6.1e-42 176.4 121 75.2
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 8.8e-41 172.6 136 66.9
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 4.1e-38 163.7 206 43.7
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 3.2e-35 154.1 113 64.6
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 1.1e-27 129.0 124 49.2
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 4.7e-26 123.6 84 72.6
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 6.3e-23 113.2 231 32.5
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 4.1e-22 110.5 96 62.5
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 2.9e-20 104.4 95 56.8
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 9.4e-19 99.4 205 32.7
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 2.4e-14 84.7 67 59.7
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 5.0e-12 77.0 256 28.1
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 8.9e-09 66.2 66 51.5
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.2e-08 65.9 81 45.7
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.2e-08 65.9 81 45.7


User provided reference genes

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