Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 0.0e+00 1080.1 572 100.0
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 1.5e-261 906.0 580 86.4
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 7.0e-243 844.0 574 79.8
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 6.1e-231 804.3 589 77.8
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.7e-212 743.0 591 73.8
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.2e-205 720.3 590 71.4
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 7.3e-176 621.3 580 66.0
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 4.2e-171 605.5 581 65.2
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 6.0e-170 601.7 583 65.0
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 3.3e-168 595.9 583 64.7
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 1.7e-164 583.6 622 60.0
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 3.2e-147 526.2 650 50.6
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.0e-141 506.9 618 56.3
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 1.4e-139 500.7 624 55.4
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.1e-136 491.1 620 55.0
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 2.9e-132 476.5 628 53.8
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.2e-130 471.1 628 52.2
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 3.2e-123 446.4 608 53.3
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 1.4e-118 431.0 614 52.6
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 2.6e-117 426.8 373 72.1
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.4e-113 414.5 619 48.8
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 1.8e-113 414.1 609 50.1
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 1.7e-111 407.5 615 49.6
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 1.4e-110 404.4 604 50.3
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 4.0e-97 359.8 601 47.4
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 2.6e-72 277.3 720 35.1
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 9.9e-72 275.4 265 66.8
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 4.9e-71 273.1 698 36.2
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 2.4e-70 270.8 708 33.6
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 7.1e-70 269.2 696 35.3
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 3.5e-69 266.9 725 33.0
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 7.8e-69 265.8 718 33.6
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 2.5e-67 260.8 725 33.4
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 1.2e-66 258.5 707 34.9
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 2.8e-66 257.3 686 34.7
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 3.8e-63 246.9 697 34.3
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 8.4e-63 245.7 696 33.9
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 8.4e-63 245.7 659 32.3
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 9.3e-62 242.3 725 33.7
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.7e-60 238.0 685 30.9
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 6.6e-60 236.1 715 33.1
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 6.6e-60 236.1 542 36.0
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 8.7e-60 235.7 710 32.3
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.1e-59 235.3 625 36.2
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 5.6e-59 233.0 720 32.9
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 5.6e-59 233.0 695 33.2
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 1.3e-58 231.9 723 32.9
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.6e-58 231.5 720 32.6
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 4.8e-58 229.9 695 32.7
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 6.2e-58 229.6 722 32.4
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 6.2e-58 229.6 734 32.2
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 1.1e-57 228.8 675 31.4
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.1e-57 228.8 701 33.2
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 5.3e-57 226.5 692 31.5
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 6.9e-57 226.1 537 36.5
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 6.9e-57 226.1 692 31.9
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.2e-56 225.3 674 32.2
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.0e-56 224.6 740 31.5
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 3.4e-56 223.8 715 31.3
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 5.8e-56 223.0 554 36.6
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.9e-55 220.7 692 31.6
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 4.2e-54 216.9 651 32.3
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 4.2e-54 216.9 540 35.4
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 5.4e-54 216.5 691 30.2
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 7.1e-54 216.1 748 31.6
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 2.1e-53 214.5 688 28.6
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 3.5e-53 213.8 573 32.8
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 4.6e-53 213.4 580 34.5
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.0e-52 212.2 541 36.0
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 1.9e-51 208.0 669 30.6
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 2.5e-51 207.6 602 32.6
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 4.3e-51 206.8 672 32.3
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 4.3e-51 206.8 712 31.5
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 4.3e-51 206.8 681 30.0
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 1.3e-50 205.3 697 30.3
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 1.6e-50 204.9 647 34.0
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.6e-50 204.9 712 30.6
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.8e-50 204.1 751 30.5
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 1.1e-49 202.2 689 30.9
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 2.4e-49 201.1 687 30.3
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 2.6e-48 197.6 558 34.4
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 3.4e-48 197.2 710 29.4
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 3.4e-48 197.2 575 31.7
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 7.6e-48 196.1 498 35.5
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 1.3e-47 195.3 616 32.1
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.7e-47 194.9 535 32.9
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 2.2e-47 194.5 528 33.7
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 2.9e-47 194.1 510 34.5
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 4.9e-47 193.4 706 31.2
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 1.4e-46 191.8 597 30.8
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 1.4e-46 191.8 706 28.6
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 1.9e-46 191.4 710 28.6
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.4e-46 191.0 664 29.5
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 5.4e-46 189.9 633 31.4
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 5.4e-46 189.9 709 28.1
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 7.1e-46 189.5 534 31.3
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.2e-45 188.7 561 31.9
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 3.5e-45 187.2 645 31.2
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 4.6e-45 186.8 608 32.4
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 3.0e-44 184.1 555 32.1
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 1.5e-43 181.8 625 29.3
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 2.5e-43 181.0 521 33.2
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 2.5e-43 181.0 696 29.9
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 2.5e-43 181.0 563 30.7
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 7.4e-43 179.5 562 30.1
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.6e-42 178.3 675 28.3
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 1.6e-42 178.3 827 26.7
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 2.1e-42 177.9 544 31.4
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 2.8e-42 177.6 593 29.8
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 2.4e-41 174.5 698 28.9
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 3.1e-41 174.1 629 31.3
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 5.3e-41 173.3 545 31.2
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 2.0e-40 171.4 687 29.1
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 2.9e-39 167.5 458 33.8
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 4.9e-39 166.8 663 29.9
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 8.4e-39 166.0 582 30.8
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 2.5e-38 164.5 560 32.3
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 3.2e-38 164.1 711 28.3
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 1.2e-37 162.2 605 29.1
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 1.6e-37 161.8 508 32.5
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 2.1e-37 161.4 560 31.2
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 2.3e-36 157.9 576 28.8
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.0e-36 157.5 578 28.4
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 8.7e-36 156.0 534 32.0
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 1.1e-35 155.6 396 31.3
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 4.3e-35 153.7 537 31.1
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 7.4e-35 152.9 510 30.4
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 9.6e-35 152.5 610 27.7
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 9.6e-35 152.5 562 31.0
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 3.1e-33 147.5 552 31.5
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 3.1e-33 147.5 385 34.8
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.0e-31 142.5 553 29.3
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.0e-31 142.5 517 30.6
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 3.8e-31 140.6 725 26.3
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 6.5e-31 139.8 696 27.4
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 8.4e-31 139.4 368 31.8
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 5.5e-30 136.7 530 29.4
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 3.3e-27 127.5 518 30.7
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 1.6e-26 125.2 298 34.6
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 2.8e-26 124.4 535 29.7
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 4.1e-25 120.6 516 30.0
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 2.0e-24 118.2 477 28.9
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 1.0e-23 115.9 521 29.0
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 1.3e-23 115.5 522 28.0
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 5.0e-23 113.6 765 25.6
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 6.5e-23 113.2 708 25.4
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.4e-22 112.1 361 30.5
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 5.5e-22 110.2 482 27.6
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 3.6e-21 107.5 463 26.1
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 6.1e-21 106.7 237 40.1
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 1.0e-20 105.9 426 28.6
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.4e-20 105.5 765 24.8
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 3.0e-20 104.4 232 39.2
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 3.9e-20 104.0 598 26.8
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 5.1e-20 103.6 491 28.9
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 2.5e-19 101.3 239 36.0
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.3e-19 100.9 224 37.9
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 4.3e-19 100.5 471 26.5
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 5.7e-19 100.1 342 32.5
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 5.7e-19 100.1 423 30.0
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 5.7e-19 100.1 229 36.2
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 7.4e-19 99.8 231 35.5
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 1.3e-18 99.0 320 30.9
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 1.7e-18 98.6 480 27.7
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 2.8e-18 97.8 375 30.1
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 5.3e-17 93.6 450 25.8
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 9.1e-17 92.8 344 31.1
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 2.6e-16 91.3 322 28.9
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 3.4e-16 90.9 335 31.9
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 4.5e-16 90.5 353 28.3
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 7.7e-16 89.7 126 52.4
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 1.3e-15 89.0 213 37.6
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 2.5e-14 84.7 405 26.2
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 4.2e-14 84.0 422 27.3
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 3.6e-13 80.9 661 23.4
C06p31970 Brassica napus HOM05D023672 ORTHO05D024296 5.1e-12 77.0 99 50.5
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 5.1e-12 77.0 365 27.9
BolC6t38324H Brassica oleracea HOM05D023672 ORTHO05D024296 6.7e-12 76.6 87 54.0
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.1e-11 75.9 206 33.0
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 1.1e-11 75.9 258 31.0
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 3.1e-09 67.8 299 26.8
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 2.6e-08 64.7 405 27.4
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 4.5e-08 63.9 213 29.6
SGA_v2.0_scaffold36G14460 Striga asiatica HOM05D003672 ORTHO05D004121 7.7e-08 63.2 374 24.3


User provided reference genes

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