Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.0e-158 562.4 288 100.0
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 8.3e-144 513.8 304 87.5
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 7.8e-134 480.7 304 81.2
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 1.1e-130 470.3 304 80.9
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 5.4e-127 458.0 307 78.2
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 7.1e-127 457.6 304 78.0
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 4.7e-123 444.9 299 76.9
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 3.7e-120 435.3 310 72.9
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 4.9e-120 434.9 287 76.7
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.1e-116 423.7 295 74.6
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 2.5e-116 422.5 276 77.9
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 2.2e-112 409.5 270 77.0
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 6.4e-112 407.9 270 76.7
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 5.1e-109 398.3 271 74.9
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 5.3e-106 388.3 316 66.5
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 5.6e-100 368.2 279 68.1
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.7e-96 356.7 270 68.9
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 1.4e-87 327.0 279 60.6
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 1.9e-87 326.6 290 58.3
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 3.2e-87 325.9 287 63.1
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 3.2e-87 325.9 279 60.2
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 4.2e-87 325.5 279 60.2
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 3.9e-85 318.9 282 58.5
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 5.1e-85 318.5 263 60.8
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.5e-84 317.0 273 62.3
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 2.5e-84 316.2 285 57.5
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 5.7e-84 315.1 272 58.8
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 1.6e-83 313.5 283 59.0
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 2.8e-83 312.8 287 57.5
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 3.7e-83 312.4 284 59.5
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 1.2e-81 307.4 276 58.7
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.6e-81 306.2 284 59.5
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 4.5e-81 305.4 286 55.6
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 5.9e-81 305.1 267 59.2
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 2.9e-80 302.8 284 59.5
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 3.8e-80 302.4 282 58.2
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 1.1e-79 300.8 283 57.2
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 3.2e-79 299.3 281 57.7
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 4.2e-79 298.9 283 56.2
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 7.2e-79 298.1 277 59.2
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 1.2e-78 297.4 286 56.3
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 2.1e-78 296.6 278 58.6
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 1.5e-76 290.4 281 56.2
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 1.5e-76 290.4 276 57.6
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 2.2e-75 286.6 280 55.7
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 6.3e-75 285.0 281 55.2
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 8.2e-75 284.6 278 54.0
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.1e-74 284.3 287 54.4
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 2.4e-74 283.1 281 55.9
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 3.1e-74 282.7 284 53.2
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 4.5e-73 278.9 280 53.9
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 5.9e-73 278.5 271 57.9
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.9e-73 278.5 276 55.8
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.3e-72 277.3 283 54.1
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 3.8e-72 275.8 288 54.9
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 3.8e-72 275.8 275 54.2
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 5.0e-72 275.4 288 54.9
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 6.5e-72 275.0 281 53.0
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 8.5e-72 274.6 287 50.9
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.1e-71 274.2 249 57.8
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 1.9e-71 273.5 279 54.5
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 2.5e-71 273.1 271 56.1
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 7.2e-71 271.6 280 52.1
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 9.4e-71 271.2 267 52.8
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.6e-70 270.4 280 53.9
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 2.1e-70 270.0 279 50.9
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.3e-69 266.5 271 53.5
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 3.0e-69 266.2 283 51.9
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 3.0e-69 266.2 270 50.4
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 8.8e-69 264.6 272 51.1
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 8.8e-69 264.6 280 49.6
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 1.5e-68 263.8 282 52.8
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 3.3e-68 262.7 289 49.8
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 7.4e-68 261.5 254 53.9
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 6.3e-67 258.5 268 53.4
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.4e-66 257.3 272 50.4
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 2.4e-66 256.5 284 51.8
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 2.2e-64 250.0 250 54.0
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 2.2e-64 250.0 254 53.1
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 2.9e-64 249.6 365 45.8
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 5.0e-64 248.8 280 52.1
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.4e-63 247.3 283 51.2
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 4.2e-63 245.7 283 46.6
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.8e-61 240.4 272 50.4
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 6.7e-61 238.4 289 47.1
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.1e-60 237.7 258 52.3
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.5e-60 237.3 222 58.6
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 2.6e-60 236.5 247 53.4
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.3e-60 236.1 222 61.3
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 3.3e-60 236.1 283 45.2
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 9.7e-60 234.6 289 46.7
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 9.7e-60 234.6 287 46.0
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 3.5e-57 226.1 289 45.7
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 6.5e-56 221.9 285 46.3
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 8.5e-56 221.5 280 47.5
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 8.0e-54 214.9 299 42.8
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 5.2e-53 212.2 272 43.8
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-52 210.7 178 67.4
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-52 210.7 178 67.4
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 5.7e-52 208.8 260 44.6
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 1.4e-50 204.1 274 44.2
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 1.8e-50 203.8 264 45.5
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 4.1e-50 202.6 221 49.3
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 5.0e-48 195.7 283 40.3
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.1e-46 190.3 118 84.7
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.0e-45 186.4 131 81.7
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 2.0e-44 183.7 248 44.0
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 2.0e-41 173.7 194 49.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 4.5e-41 172.6 189 57.1
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 5.0e-40 169.1 179 54.2
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 6.5e-40 168.7 178 51.7
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 1.9e-39 167.2 191 55.5
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 1.8e-37 160.6 219 42.5
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 3.0e-37 159.8 189 54.0
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 4.0e-37 159.5 270 39.6
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-36 157.5 192 52.1
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.0e-36 157.1 192 51.6
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 7.0e-34 148.7 187 51.9
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 5.0e-32 142.5 173 43.4
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.5e-31 140.2 148 58.8
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 5.2e-29 132.5 258 34.1
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 8.6e-24 115.2 135 45.2
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.5e-23 114.4 156 42.9
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.6e-23 112.5 136 55.1
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 1.2e-20 104.8 102 56.9
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 2.0e-20 104.0 168 40.5
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 2.6e-20 103.6 205 36.6
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 5.8e-20 102.4 85 60.0
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 1.1e-18 98.2 220 34.5
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 4.6e-17 92.8 67 74.6
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 4.6e-17 92.8 67 74.6
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 4.3e-15 86.3 122 41.8
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.2e-14 82.4 65 64.6
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 1.4e-13 81.3 86 44.2
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 9.8e-12 75.1 86 46.5
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 3.2e-10 70.1 177 27.7
BolC2t09494H Brassica oleracea HOM05D005448 ORTHO05D006405 1.6e-09 67.8 52 73.1
VMungo1127G0437 Vigna mungo HOM05D005448 ORTHO05D006405 1.0e-08 65.1 158 30.4
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 1.1e-07 61.6 173 28.3
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.6e-07 59.3 62 50.0


User provided reference genes

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