Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.3e-64 249.2 177 100.0
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 9.9e-55 217.2 177 90.4
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.2e-53 212.2 177 91.5
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 7.8e-44 181.0 174 70.1
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 3.0e-43 179.1 177 85.3
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.5e-42 176.0 177 82.5
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 4.3e-42 175.3 177 72.9
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 4.8e-41 171.8 177 83.1
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 4.0e-40 168.7 178 80.9
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 5.3e-40 168.3 178 80.9
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 5.3e-40 168.3 178 80.9
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 6.9e-40 167.9 178 80.3
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 8.4e-38 161.0 179 78.8
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.4e-37 160.2 178 67.4
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.9e-37 159.8 177 67.8
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.9e-37 159.8 180 65.0
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.2e-36 157.1 177 66.1
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 2.7e-36 156.0 176 67.0
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.0e-35 152.5 168 75.0
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.9e-35 152.1 168 75.0
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 3.9e-35 152.1 168 75.0
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 6.6e-35 151.4 166 66.3
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 6.6e-35 151.4 166 66.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 6.6e-35 151.4 166 66.3
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 8.7e-35 151.0 176 73.3
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.9e-34 149.8 177 59.9
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.5e-34 149.4 177 59.9
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 4.3e-34 148.7 177 59.3
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 4.3e-34 148.7 177 72.9
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 7.3e-34 147.9 177 58.8
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.3e-34 147.9 177 58.8
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.3e-34 147.9 177 58.8
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 1.3e-33 147.1 166 78.9
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.6e-33 146.7 177 62.7
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.6e-33 146.7 176 75.6
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 1.6e-33 146.7 176 72.2
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 2.1e-33 146.4 177 71.8
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 2.1e-33 146.4 168 61.9
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.1e-33 146.4 177 70.1
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.1e-33 146.4 179 62.0
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 2.8e-33 146.0 179 73.7
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.6e-33 145.6 177 60.5
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 4.8e-33 145.2 172 60.5
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 4.8e-33 145.2 168 63.1
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 6.2e-33 144.8 177 74.6
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 6.2e-33 144.8 177 74.6
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.1e-32 144.1 168 60.7
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.8e-32 143.3 177 58.8
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.4e-32 142.9 179 70.9
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.4e-32 142.9 177 70.6
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.1e-32 142.5 177 60.5
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 6.9e-32 141.4 176 72.7
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.0e-31 139.8 169 60.4
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 2.0e-31 139.8 177 67.8
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 2.6e-31 139.4 168 75.6
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 3.4e-31 139.0 168 63.1
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 3.4e-31 139.0 177 58.2
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.8e-31 138.3 177 71.2
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 7.6e-31 137.9 179 46.4
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.7e-30 136.7 162 70.4
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 2.2e-30 136.3 168 60.7
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 2.9e-30 136.0 177 70.6
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 2.9e-30 136.0 177 59.9
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.9e-30 136.0 177 70.1
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 4.9e-30 135.2 177 71.8
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 6.4e-30 134.8 177 70.6
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 8.4e-30 134.4 170 67.1
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 8.4e-30 134.4 177 57.1
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.1e-29 134.0 166 62.0
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.4e-29 133.7 161 75.2
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.4e-29 133.7 161 75.2
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.9e-29 133.3 172 59.3
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.9e-29 133.3 166 71.7
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 2.4e-29 132.9 177 69.5
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 3.2e-29 132.5 177 62.7
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 4.2e-29 132.1 172 71.5
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 5.4e-29 131.7 169 59.8
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 5.4e-29 131.7 174 64.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 7.1e-29 131.3 164 70.1
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 7.1e-29 131.3 160 71.2
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 9.3e-29 131.0 160 68.1
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.2e-28 130.6 168 57.7
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.6e-28 130.2 168 54.8
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 3.5e-28 129.0 152 63.8
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 3.5e-28 129.0 167 61.1
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 4.6e-28 128.6 160 60.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 6.0e-28 128.3 168 57.1
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 6.0e-28 128.3 161 63.4
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 7.9e-28 127.9 160 60.6
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 7.9e-28 127.9 160 71.2
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.0e-27 127.5 149 71.1
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.0e-27 127.5 177 68.4
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.8e-27 126.7 169 68.0
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.3e-27 126.3 163 60.1
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 2.3e-27 126.3 174 59.2
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 6.7e-27 124.8 177 66.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 8.7e-27 124.4 175 68.0
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 8.7e-27 124.4 169 59.2
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.1e-26 124.0 145 68.3
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.9e-26 123.2 158 72.8
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.5e-26 122.9 161 68.9
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 3.3e-26 122.5 158 72.8
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 3.3e-26 122.5 165 73.9
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.4e-26 121.3 168 59.5
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.3e-25 120.6 167 67.7
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.6e-25 120.2 176 67.0
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.8e-25 119.4 176 43.8
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 3.7e-25 119.0 176 56.8
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.7e-25 119.0 166 66.3
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 4.8e-25 118.6 166 43.4
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 6.2e-25 118.2 166 65.7
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 6.2e-25 118.2 176 43.2
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 8.1e-25 117.9 144 66.7
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-24 117.5 176 58.0
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.8e-24 116.7 160 46.2
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.4e-24 116.3 160 59.4
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 3.1e-24 115.9 168 53.6
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.0e-24 115.5 170 42.9
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 5.3e-24 115.2 170 42.9
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 6.9e-24 114.8 175 66.3
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 9.0e-24 114.4 169 52.1
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 9.0e-24 114.4 160 59.4
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 9.0e-24 114.4 160 59.4
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.2e-23 114.0 242 34.3
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.5e-23 113.6 166 54.2
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.5e-23 113.6 160 59.4
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 2.6e-23 112.8 155 57.4
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 3.4e-23 112.5 164 67.7
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 3.4e-23 112.5 164 55.5
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.9e-22 109.4 177 61.6
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.1e-21 107.5 151 71.5
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.9e-21 106.7 172 49.4
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.7e-20 102.8 166 45.8
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 3.5e-20 102.4 154 53.9
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 7.9e-20 101.3 160 38.1
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.3e-19 100.5 176 65.9
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 1.3e-14 84.0 131 55.0
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.2e-14 83.2 82 52.4
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 5.0e-14 82.0 120 55.8
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 5.0e-14 82.0 103 72.8
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.1e-12 76.6 146 47.9
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 4.6e-12 75.5 117 35.0
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 5.1e-11 72.0 77 46.8
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 1.5e-10 70.5 122 53.3
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 4.3e-10 68.9 90 68.9
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 9.7e-10 67.8 131 49.6
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.3e-09 67.4 110 55.5
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 3.7e-09 65.9 47 63.8
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.1e-08 64.3 102 60.8


User provided reference genes

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