Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.4e-298 1028.9 523 100.0
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 4.2e-271 937.6 523 90.8
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.6e-265 919.1 523 90.1
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 2.7e-257 891.7 523 87.0
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 3.7e-251 871.3 526 84.8
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 5.4e-250 867.5 526 84.6
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 1.6e-249 865.9 526 85.2
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 5.9e-249 864.0 526 85.2
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 7.3e-247 857.1 527 84.1
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 9.5e-247 856.7 527 84.1
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.0e-245 853.2 508 85.4
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 4.6e-241 837.8 512 81.1
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 1.5e-236 822.8 641 69.6
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.0e-236 822.4 630 70.6
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 3.6e-230 801.6 516 80.8
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 2.2e-227 792.3 515 78.4
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 3.1e-221 771.9 513 73.5
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 4.4e-220 768.1 516 73.8
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 4.1e-218 761.5 516 73.4
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.2e-217 760.0 512 73.6
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.1e-217 759.2 519 73.8
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 3.5e-217 758.4 516 73.6
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.5e-215 753.1 493 80.3
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 2.5e-215 752.3 509 72.7
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.5e-215 752.3 514 73.0
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 9.6e-215 750.4 516 72.3
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 2.1e-214 749.2 517 70.6
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 2.1e-214 749.2 518 71.0
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 6.2e-214 747.7 510 72.0
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 2.0e-212 742.7 522 70.3
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 3.4e-212 741.9 509 71.9
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 7.6e-212 740.7 517 70.6
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 7.6e-212 740.7 528 69.7
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 2.2e-211 739.2 515 70.5
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 4.9e-211 738.0 519 69.9
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 1.1e-210 736.9 517 70.0
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.4e-210 734.6 504 71.8
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 6.0e-209 731.1 518 70.3
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 1.1e-207 726.9 516 69.8
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 5.6e-207 724.5 513 70.8
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 7.3e-207 724.2 509 69.7
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 2.8e-206 722.2 516 69.6
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.8e-205 719.5 510 70.6
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 4.0e-205 718.4 516 68.6
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 1.2e-204 716.8 519 69.4
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.6e-204 715.7 542 66.4
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 3.4e-204 715.3 510 69.4
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 7.6e-204 714.1 515 69.7
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 9.9e-204 713.8 515 68.5
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.9e-204 713.8 512 69.9
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.3e-203 713.4 521 68.7
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.4e-202 709.9 592 61.5
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 9.3e-202 707.2 516 68.2
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.7e-201 705.7 487 73.7
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 6.0e-201 704.5 513 67.6
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 5.1e-200 701.4 513 67.4
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 5.6e-199 698.0 486 70.8
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 5.5e-194 681.4 477 71.5
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 8.7e-192 674.1 510 65.7
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 1.5e-191 673.3 469 71.0
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 3.7e-190 668.7 509 65.8
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 6.9e-189 664.5 496 67.9
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 7.9e-185 651.0 512 65.0
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 7.9e-185 651.0 516 65.3
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 4.1e-181 638.6 525 64.4
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 9.0e-181 637.5 550 59.6
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.6e-177 625.2 496 65.3
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 7.9e-177 624.4 440 69.8
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 6.7e-176 621.3 505 64.6
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 7.4e-175 617.8 505 64.0
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 1.3e-174 617.1 421 73.4
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 2.2e-174 616.3 476 71.0
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 4.8e-174 615.1 516 59.1
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.5e-172 610.1 520 62.5
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.5e-172 610.1 423 71.6
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 2.0e-172 609.8 500 61.4
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 8.5e-171 604.4 513 60.2
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 1.9e-170 603.2 476 70.0
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 2.1e-169 599.7 410 73.9
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.1e-167 594.0 460 66.3
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 2.2e-166 589.7 420 70.2
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 4.8e-166 588.6 498 62.0
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 5.9e-164 581.6 449 64.6
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 9.4e-162 574.3 505 61.4
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 1.6e-161 573.5 419 68.5
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.6e-161 573.5 423 68.6
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.7e-161 572.0 423 67.1
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 1.8e-160 570.1 517 58.0
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 3.2e-154 549.3 579 52.8
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.5e-154 548.5 387 72.6
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.1e-153 546.6 543 56.0
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 8.8e-152 541.2 446 61.9
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 2.6e-151 539.7 552 54.2
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 1.1e-149 534.3 510 53.9
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 1.3e-147 527.3 423 64.5
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 8.5e-147 524.6 501 54.7
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 2.0e-140 503.4 443 58.0
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 4.5e-140 502.3 390 66.9
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 9.5e-138 494.6 467 55.2
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.7e-137 492.3 438 59.4
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 2.3e-131 473.4 376 64.9
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.3e-130 469.2 422 59.7
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 9.5e-122 441.4 252 88.9
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 1.2e-116 424.5 517 45.3
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 2.1e-116 423.7 294 71.1
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 3.5e-116 422.9 478 48.3
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 6.0e-116 422.2 297 70.0
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.0e-115 419.9 390 56.7
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.6e-108 396.0 341 61.0
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.1e-106 391.3 508 43.3
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.9e-94 350.1 457 43.8
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.1e-93 348.2 323 58.2
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 8.7e-91 338.6 408 51.2
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 2.1e-81 307.4 264 59.8
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.0e-80 303.1 370 48.4
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 3.2e-77 293.5 214 65.9
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.3e-73 281.6 167 84.4
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.1e-73 280.8 469 39.2
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.3e-67 260.8 188 67.0
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 5.1e-67 259.6 430 38.6
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.1e-66 258.5 194 68.6
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 3.4e-63 246.9 217 60.4
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 2.4e-56 224.2 672 27.7
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 3.2e-53 213.8 198 57.6
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 1.3e-46 191.8 189 53.4
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 4.1e-40 170.2 513 29.0
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 1.7e-38 164.9 161 55.9
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 3.2e-37 160.6 178 51.1
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 3.0e-35 154.1 97 79.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.7e-33 148.3 122 56.6
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 2.4e-32 144.4 148 50.7
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 7.2e-29 132.9 555 26.5
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.6e-28 131.7 149 43.6
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.6e-28 131.7 149 43.6
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.7e-28 130.2 86 72.1
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.7e-28 130.2 97 71.1
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 2.6e-26 124.4 93 66.7
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.1e-24 117.5 94 57.4
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 3.5e-23 114.0 94 56.4
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 6.6e-22 109.8 78 57.7
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 1.2e-20 105.5 73 72.6
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 3.0e-19 100.9 89 62.9
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.7e-18 96.7 62 79.0
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.7e-18 96.7 62 79.0
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 6.3e-17 93.2 67 68.7
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 5.9e-15 86.7 239 30.5
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 1.0e-14 85.9 56 75.0
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.1e-13 82.4 61 62.3
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.5e-13 82.0 112 38.4
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 9.5e-13 79.3 80 56.2
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.2e-12 79.0 50 78.0
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.5e-10 72.0 49 73.5
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 3.9e-06 57.4 189 28.0


User provided reference genes

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