Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G17840 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 4.0e-71 273.1 353 100.0
AT5G07530 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 1.4e-58 231.5 147 89.8
Carub.0006s0651 Capsella rubella HOM05D007846 ORTHO05D010837 1.1e-47 195.3 157 74.5
CARHR205620 Cardamine hirsuta HOM05D007846 ORTHO05D010837 2.0e-33 147.9 113 73.5
Thhalv10013795m.g Eutrema salsugineum HOM05D007846 ORTHO05D195878 5.3e-31 139.8 112 69.6
BcaB01g06046 Brassica carinata HOM05D007846 ORTHO05D010837 1.0e-29 135.6 101 74.3
BolC3t12914H Brassica oleracea HOM05D007846 ORTHO05D010837 1.0e-29 135.6 101 74.3
A03p03340 Brassica napus HOM05D007846 ORTHO05D010837 2.0e-25 121.3 101 68.3
BraA03t09686Z Brassica rapa HOM05D007846 ORTHO05D010837 2.0e-25 121.3 101 68.3
AL6G17910 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 2.2e-24 117.9 109 65.1
Sp6g35330 Schrenkiella parvula HOM05D007846 ORTHO05D021761 4.8e-24 116.7 103 61.2
Sp6g35340 Schrenkiella parvula HOM05D007846 ORTHO05D371621 6.3e-24 116.3 151 52.3
C02p03180 Brassica napus HOM05D007846 ORTHO05D010837 7.7e-22 109.4 127 53.5
BolC2t06280H Brassica oleracea HOM05D007846 ORTHO05D010837 7.7e-22 109.4 127 53.5
AT5G07600 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 1.7e-21 108.2 143 53.1
BraA02t04922Z Brassica rapa HOM05D007846 ORTHO05D010837 2.9e-21 107.5 110 58.2
Carub.0006s0650 Capsella rubella HOM05D007846 ORTHO05D010837 8.6e-21 105.9 145 52.4
AT5G07540 Arabidopsis thaliana HOM05D007846 ORTHO05D031404 2.5e-20 104.4 116 52.6
A03p03350 Brassica napus HOM05D007846 ORTHO05D010837 3.3e-20 104.0 86 72.1
AL6G17850 Arabidopsis lyrata HOM05D007846 ORTHO05D031404 5.5e-20 103.2 129 48.1
BcaB01g05692 Brassica carinata HOM05D007846 ORTHO05D010837 5.5e-20 103.2 113 59.3
BcaB01g06048 Brassica carinata HOM05D007846 ORTHO05D010837 5.5e-20 103.2 86 70.9
C09p69670 Brassica napus HOM05D007846 ORTHO05D021761 5.5e-20 103.2 109 53.2
BolC9t59710H Brassica oleracea HOM05D007846 ORTHO05D021761 5.5e-20 103.2 109 53.2
BcaB01g06047 Brassica carinata HOM05D007846 ORTHO05D010837 2.8e-19 100.9 146 51.4
C09p69650 Brassica napus HOM05D007846 ORTHO05D010837 3.6e-19 100.5 137 51.8
BolC9t59708H Brassica oleracea HOM05D007846 ORTHO05D010837 3.6e-19 100.5 137 51.8
A10p29300 Brassica napus HOM05D007846 ORTHO05D021761 1.0e-18 99.0 121 50.4
C03p03790 Brassica napus HOM05D007846 ORTHO05D010837 1.0e-18 99.0 145 51.0
BraA08t34994Z Brassica rapa HOM05D007846 ORTHO05D010837 1.0e-18 99.0 141 51.8
BraA10t44974Z Brassica rapa HOM05D007846 ORTHO05D021761 1.0e-18 99.0 121 50.4
C08p18270 Brassica napus HOM05D007846 ORTHO05D010837 1.4e-18 98.6 92 65.2
BolC8t49462H Brassica oleracea HOM05D007846 ORTHO05D010837 1.8e-18 98.2 141 51.8
BcaC06g32487 Brassica carinata HOM05D007846 ORTHO05D010837 2.3e-18 97.8 84 67.9
AL6G17830 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 4.0e-18 97.1 145 49.7
BcaC06g32428 Brassica carinata HOM05D007846 ORTHO05D010837 4.0e-18 97.1 150 50.0
C09p69640 Brassica napus HOM05D007846 ORTHO05D010837 4.0e-18 97.1 150 50.0
BolC9t59707H Brassica oleracea HOM05D007846 ORTHO05D010837 4.0e-18 97.1 150 50.0
Aa31LG3G18890 Aethionema arabicum HOM05D007846 ORTHO05D010837 5.2e-18 96.7 143 44.8
AT5G07520 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 5.2e-18 96.7 147 49.7
Carub.0006s0653 Capsella rubella HOM05D007846 ORTHO05D000624 5.2e-18 96.7 105 55.2
Carub.0006s0658 Capsella rubella HOM05D007846 ORTHO05D010837 6.8e-18 96.3 154 46.8
A10p29250 Brassica napus HOM05D007846 ORTHO05D010837 1.5e-17 95.1 146 49.3
BraA10t44971Z Brassica rapa HOM05D007846 ORTHO05D010837 1.5e-17 95.1 146 49.3
BcaC06g32486 Brassica carinata HOM05D007846 ORTHO05D010837 2.6e-17 94.4 145 48.3
Thhalv10015090m.g Eutrema salsugineum HOM05D007846 ORTHO05D000624 3.4e-17 94.0 104 54.8
BraA02t04921Z Brassica rapa HOM05D007846 ORTHO05D010837 1.7e-16 91.7 135 49.6
AL6G17860 Arabidopsis lyrata HOM05D007846 ORTHO05D000624 2.8e-16 90.9 108 49.1
Thhalv10015089m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 2.8e-16 90.9 105 53.3
BcaC03g13199 Brassica carinata HOM05D007846 ORTHO05D010837 4.9e-16 90.1 135 48.9
C02p03150 Brassica napus HOM05D007846 ORTHO05D010837 4.9e-16 90.1 135 48.9
BolC2t06277H Brassica oleracea HOM05D007846 ORTHO05D010837 4.9e-16 90.1 135 48.9
BcaB05g21610 Brassica carinata HOM05D007846 ORTHO05D010837 6.3e-16 89.7 86 61.6
Sp6g35310 Schrenkiella parvula HOM05D007846 ORTHO05D000624 8.3e-16 89.4 105 52.4
Sp6g35320 Schrenkiella parvula HOM05D000805 ORTHO05D000624 1.8e-15 88.2 97 55.7
Sp6g35350 Schrenkiella parvula HOM05D007846 ORTHO05D010837 3.1e-15 87.4 91 63.7
Thhalv10014560m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 4.1e-15 87.0 144 43.8
AT5G07550 Arabidopsis thaliana HOM05D007846 ORTHO05D000624 9.2e-15 85.9 105 48.6
A03p03360 Brassica napus HOM05D000805 ORTHO05D000624 1.6e-14 85.1 116 46.6
BolC3t12915H Brassica oleracea HOM05D000805 ORTHO05D000624 1.6e-14 85.1 116 46.6
C03p03800 Brassica napus HOM05D000805 ORTHO05D000624 2.0e-14 84.7 116 46.6
AL6G17810 Arabidopsis lyrata HOM05D007846 ORTHO05D038626 2.7e-14 84.3 91 58.2
AT5G07510 Arabidopsis thaliana HOM05D007846 ORTHO05D038626 2.7e-14 84.3 91 59.3
BcaC06g32488 Brassica carinata HOM05D021341 ORTHO05D093304 1.0e-13 82.4 77 66.2
BcaC03g13197 Brassica carinata HOM05D007846 ORTHO05D010837 1.3e-13 82.0 86 61.6
BraA03t09687Z Brassica rapa HOM05D000805 ORTHO05D000624 1.3e-13 82.0 116 45.7
CARHR205610 Cardamine hirsuta HOM05D007846 ORTHO05D000624 1.3e-13 82.0 99 49.5
BcaC06g32423 Brassica carinata HOM05D007846 ORTHO05D023961 3.9e-13 80.5 97 49.5
C09p69680 Brassica napus HOM05D007846 ORTHO05D023961 3.9e-13 80.5 97 49.5
BolC9t59711H Brassica oleracea HOM05D007846 ORTHO05D023961 3.9e-13 80.5 97 49.5
A10p29310 Brassica napus HOM05D007846 ORTHO05D023961 5.0e-13 80.1 106 48.1
BraA10t44975Z Brassica rapa HOM05D007846 ORTHO05D023961 5.0e-13 80.1 106 48.1
Carub.0006s0652 Capsella rubella HOM05D007846 ORTHO05D031404 1.5e-12 78.6 103 44.7
BcaB01g06049 Brassica carinata HOM05D007846 ORTHO05D000624 3.3e-12 77.4 79 55.7
Thhalv10014587m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 5.6e-12 76.6 58 75.9
BcaC06g32489 Brassica carinata HOM05D007846 ORTHO05D090820 9.5e-12 75.9 109 42.2
BcaC06g32490 Brassica carinata HOM05D007846 ORTHO05D000624 3.6e-11 73.9 97 46.4
BcaC06g32424 Brassica carinata HOM05D007846 ORTHO05D021761 8.0e-11 72.8 87 49.4
CARHR205600 Cardamine hirsuta HOM05D007846 ORTHO05D012592 1.0e-10 72.4 96 47.9
Sp6g35300 Schrenkiella parvula HOM05D000805 ORTHO05D012592 3.1e-10 70.9 98 46.9
Thhalv10014500m.g Eutrema salsugineum HOM05D000805 ORTHO05D012592 5.2e-10 70.1 114 41.2
Aa31LG3G18860 Aethionema arabicum HOM05D007846 ORTHO05D000624 6.8e-10 69.7 100 45.0
BraA02t04924Z Brassica rapa HOM05D007846 ORTHO05D012592 1.2e-09 68.9 80 52.5
CARHR205580 Cardamine hirsuta HOM05D007846 ORTHO05D012592 1.2e-09 68.9 71 57.7
C02p03200 Brassica napus HOM05D007846 ORTHO05D012592 3.4e-09 67.4 80 51.2
BolC2t06282H Brassica oleracea HOM05D007846 ORTHO05D012592 3.4e-09 67.4 80 51.2
Thhalv10015579m.g Eutrema salsugineum HOM05D000805 ORTHO05D196068 3.4e-09 67.4 98 42.9
Carub.0006s0654 Capsella rubella HOM05D000805 ORTHO05D012592 4.4e-09 67.0 94 46.8
AL6G17870 Arabidopsis lyrata HOM05D007846 ORTHO05D012592 7.5e-09 66.2 98 44.9
BcaB05g21609 Brassica carinata HOM05D000805 ORTHO05D012592 1.3e-08 65.5 80 51.2
Sp2g24820 Schrenkiella parvula HOM05D013628 ORTHO05D015917 1.3e-08 65.5 76 47.4
BraA02t04923Z Brassica rapa HOM05D000805 ORTHO05D012592 1.7e-08 65.1 80 50.0
C02p03190 Brassica napus HOM05D000805 ORTHO05D012592 8.3e-08 62.8 92 45.7
BolC2t06281H Brassica oleracea HOM05D000805 ORTHO05D012592 8.3e-08 62.8 92 45.7
ECA233G2751 Erigeron canadensis HOM05D000805 ORTHO05D000624 1.1e-07 62.4 91 42.9
TAR629G3054 Trochodendron aralioides HOM05D000805 ORTHO05D000624 1.1e-07 62.4 91 44.0
TAR629G3395 Trochodendron aralioides HOM05D000225 ORTHO05D002520 1.1e-07 62.4 84 41.7
TAR636G2754 Trochodendron aralioides HOM05D000805 ORTHO05D000624 1.1e-07 62.4 91 44.0
A10p29260 Brassica napus HOM05D007846 ORTHO05D010837 1.4e-07 62.0 137 38.7
BraA10t44972Z Brassica rapa HOM05D007846 ORTHO05D010837 1.4e-07 62.0 137 38.7
DCAR_026163 Daucus carota HOM05D000805 ORTHO05D000624 1.4e-07 62.0 77 42.9
TAR374G0719 Trochodendron aralioides HOM05D000805 ORTHO05D000624 1.4e-07 62.0 72 50.0
AT5G07560 Arabidopsis thaliana HOM05D007846 ORTHO05D012592 3.2e-07 60.8 103 41.7
Rhsim09G0189400 Rhododendron simsii HOM05D000805 ORTHO05D000624 4.1e-07 60.5 91 44.0
Ah.13g065760 Amaranthus hybridus HOM05D000805 ORTHO05D000624 5.4e-07 60.1 81 43.2
AT5G07571 Arabidopsis thaliana HOM05D000805 ORTHO05D012592 5.4e-07 60.1 85 44.7
BcaB08g35479 Brassica carinata HOM05D000805 ORTHO05D000624 5.4e-07 60.1 81 44.4
A10p07910 Brassica napus HOM05D000805 ORTHO05D000624 5.4e-07 60.1 81 44.4
BraSC35t46007Z Brassica rapa HOM05D000805 ORTHO05D000624 5.4e-07 60.1 81 44.4
Cpa.g.sc13.249 Carica papaya HOM05D000805 ORTHO05D000624 5.4e-07 60.1 116 37.9
AUR62002243 Chenopodium quinoa HOM05D000805 ORTHO05D000624 5.4e-07 60.1 81 43.2
DCAR_020171 Daucus carota HOM05D000805 ORTHO05D000624 7.0e-07 59.7 57 50.9
vmacro09924 Vaccinium macrocarpon HOM05D000805 ORTHO05D000624 7.0e-07 59.7 90 45.6
COL.COLO4_37336 Corchorus olitorius HOM05D000805 ORTHO05D000624 9.2e-07 59.3 90 42.2
CsaV3_5G004910 Cucumis sativus L. HOM05D000805 ORTHO05D000624 9.2e-07 59.3 77 44.2
Peaxi162Scf00271g00056 Petunia axillaris HOM05D000805 ORTHO05D000624 9.2e-07 59.3 114 35.1
Thhalv10015754m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 1.2e-06 58.9 84 42.9
Manes.06G131000 Manihot esculenta HOM05D000805 ORTHO05D000624 1.2e-06 58.9 91 40.7
PGR142G3461 Punica granatum HOM05D000805 ORTHO05D000624 1.2e-06 58.9 91 41.8
Solyc12g010920.2 Solanum lycopersicum HOM05D000805 ORTHO05D000624 1.2e-06 58.9 76 40.8
Sopen12g006280 Solanum pennellii HOM05D000805 ORTHO05D000624 1.2e-06 58.9 76 40.8
BcaC04g20722 Brassica carinata HOM05D000805 ORTHO05D000624 1.6e-06 58.5 81 43.2
C09p39880 Brassica napus HOM05D000805 ORTHO05D000624 1.6e-06 58.5 81 43.2
BolC9t56887H Brassica oleracea HOM05D000805 ORTHO05D000624 1.6e-06 58.5 81 43.2
Carub.0006s0655 Capsella rubella HOM05D000805 ORTHO05D114467 1.6e-06 58.5 91 45.1
Ah.07g207520 Amaranthus hybridus HOM05D000805 ORTHO05D000624 2.0e-06 58.2 81 43.2
CSS0014477 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 2.0e-06 58.2 91 42.9
CSS0044328 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 2.0e-06 58.2 91 42.9
Cc02_g04750 Coffea canephora HOM05D000805 ORTHO05D000624 2.0e-06 58.2 91 41.8
Lsat_1_v5_gn_2_127000 Lactuca sativa HOM05D000805 ORTHO05D000624 2.0e-06 58.2 77 44.2
Oeu021666.1 Olea europaea HOM05D000805 ORTHO05D000624 2.0e-06 58.2 91 38.5
Oeu024712.1 Olea europaea HOM05D000805 ORTHO05D000624 2.0e-06 58.2 82 43.9
BcaC06g32425 Brassica carinata HOM05D021341 ORTHO05D024077 2.7e-06 57.8 45 75.6
A10p29270 Brassica napus HOM05D021341 ORTHO05D024077 2.7e-06 57.8 56 67.9
C09p69660 Brassica napus HOM05D021341 ORTHO05D024077 2.7e-06 57.8 45 75.6
BolC9t59709H Brassica oleracea HOM05D021341 ORTHO05D024077 2.7e-06 57.8 45 75.6
BraA10t44973Z Brassica rapa HOM05D021341 ORTHO05D024077 2.7e-06 57.8 56 67.9
Sp6g13410 Schrenkiella parvula HOM05D000805 ORTHO05D000624 2.7e-06 57.8 81 43.2
Sc06g0000870 Simmondsia chinensis HOM05D000805 ORTHO05D000624 2.7e-06 57.8 75 44.0
SGA_v2.0_scaffold56G19908 Striga asiatica HOM05D000805 ORTHO05D000624 2.7e-06 57.8 90 41.1
CARHR256810 Cardamine hirsuta HOM05D000805 ORTHO05D000624 3.5e-06 57.4 81 43.2
CiPaw.08G042000 Carya illinoinensis HOM05D000805 ORTHO05D000624 3.5e-06 57.4 77 42.9
Dinv20614 Davidia involucrata HOM05D000805 ORTHO05D000624 3.5e-06 57.4 76 46.1
Lj5g0000097 Lotus japonicus HOM05D000805 ORTHO05D000624 3.5e-06 57.4 91 42.9
Nitab4.5_0009528g0030 Nicotiana tabacum HOM05D000805 ORTHO05D000624 3.5e-06 57.4 76 43.4
Nitab4.5_0010114g0020 Nicotiana tabacum HOM05D000805 ORTHO05D000624 3.5e-06 57.4 76 40.8
Nitab4.5_0010435g0010 Nicotiana tabacum HOM05D000805 ORTHO05D000624 3.5e-06 57.4 81 43.2
Peaxi162Scf00255g00091 Petunia axillaris HOM05D000805 ORTHO05D000624 3.5e-06 57.4 76 39.5
PGR044G0588 Punica granatum HOM05D000805 ORTHO05D000624 3.5e-06 57.4 76 40.8
SalBow3G3569 Salvia bowleyana HOM05D000805 ORTHO05D000624 3.5e-06 57.4 90 42.2
SalBow3G4276 Salvia bowleyana HOM05D000805 ORTHO05D000624 3.5e-06 57.4 90 42.2
Solyc03g112440.1 Solanum lycopersicum HOM05D000805 ORTHO05D000624 3.5e-06 57.4 82 42.7
Sopen03g031520 Solanum pennellii HOM05D000805 ORTHO05D000624 3.5e-06 57.4 82 42.7
Aa31LG3G7740 Aethionema arabicum HOM05D000805 ORTHO05D000624 4.6e-06 57.0 109 35.8
Aa31LG7G10490 Aethionema arabicum HOM05D000805 ORTHO05D000624 4.6e-06 57.0 123 35.0
BolC7t45054H Brassica oleracea HOM05D013628 ORTHO05D015917 4.6e-06 57.0 72 45.8
CAN.G1148.6 Capsicum annuum HOM05D000805 ORTHO05D000624 4.6e-06 57.0 76 39.5
CAN.G338.15 Capsicum annuum HOM05D000805 ORTHO05D000624 4.6e-06 57.0 82 42.7
Ciclev10016997m.g Citrus clementina HOM05D000805 ORTHO05D000624 4.6e-06 57.0 76 43.4
Eucgr.C00618 Eucalyptus grandis HOM05D000805 ORTHO05D000624 4.6e-06 57.0 80 38.8
Lsat_1_v5_gn_0_35501 Lactuca sativa HOM05D000805 ORTHO05D000624 4.6e-06 57.0 63 49.2
TAR371G1184 Trochodendron aralioides HOM05D000805 ORTHO05D000624 4.6e-06 57.0 83 39.8
Actinidia13613 Actinidia chinensis HOM05D000805 ORTHO05D000624 6.0e-06 56.6 91 40.7
ATR0705G219 Amborella trichopoda HOM05D000805 ORTHO05D000624 6.0e-06 56.6 75 42.7
C07p45310 Brassica napus HOM05D013628 ORTHO05D015917 6.0e-06 56.6 72 45.8
Carub.0008s1125 Capsella rubella HOM05D000805 ORTHO05D000624 6.0e-06 56.6 81 42.0
Cpa.g.sc110.15 Carica papaya HOM05D000805 ORTHO05D000624 6.0e-06 56.6 82 43.9
Nitab4.5_0005418g0020 Nicotiana tabacum HOM05D000805 ORTHO05D000624 6.0e-06 56.6 76 42.1
SGA_v2.0_scaffold25G10809 Striga asiatica HOM05D000805 ORTHO05D000624 6.0e-06 56.6 81 46.9
THA.LOC104811538 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 6.0e-06 56.6 91 39.6
Actinidia31770 Actinidia chinensis HOM05D000805 ORTHO05D000624 7.8e-06 56.2 81 43.2
AT5G51210 Arabidopsis thaliana HOM05D000805 ORTHO05D000624 7.8e-06 56.2 81 40.7
CSS0030466 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 7.8e-06 56.2 91 39.6
Carub.0008s2231 Capsella rubella HOM05D013628 ORTHO05D015917 7.8e-06 56.2 58 50.0
ECA238G2834 Erigeron canadensis HOM05D000805 ORTHO05D000624 7.8e-06 56.2 81 40.7
FAN10G3456 Fragaria x ananassa HOM05D000805 ORTHO05D000624 7.8e-06 56.2 91 39.6
HanXRQChr07g0205601 Helianthus annuus HOM05D000805 ORTHO05D000624 7.8e-06 56.2 103 35.9
PGSC0003DMG400018176 Solanum tuberosum HOM05D000805 ORTHO05D000624 7.8e-06 56.2 76 40.8
THA.LOC104825056 Tarenaya hassleriana HOM05D000805 ORTHO05D000624 7.8e-06 56.2 77 42.9


User provided reference genes

Program Settings