Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 0.0e+00 1284.6 646 100.0
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 0.0e+00 1173.3 646 91.0
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 0.0e+00 1116.7 651 85.7
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 0.0e+00 1108.6 661 84.3
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 1.1e-305 1052.7 663 82.1
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 6.3e-301 1036.9 661 80.6
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 8.3e-301 1036.6 660 80.6
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 4.2e-297 1024.2 657 79.8
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 7.2e-297 1023.5 657 79.9
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.7e-293 1012.3 660 79.2
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 1.7e-253 879.4 658 71.6
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 1.2e-230 803.5 654 64.1
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 5.5e-212 741.5 662 58.5
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 3.4e-206 722.2 660 57.3
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 6.5e-205 718.0 655 56.6
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 7.2e-204 714.5 658 55.0
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 7.2e-204 714.5 655 55.6
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 4.4e-201 705.3 667 55.2
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 6.5e-197 691.4 642 54.8
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 2.1e-195 686.4 666 53.8
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 4.7e-195 685.3 657 54.8
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 2.3e-194 682.9 637 54.6
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 2.8e-192 676.0 665 54.6
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 7.2e-188 661.4 649 53.2
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 1.6e-187 660.2 659 53.1
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 1.8e-183 646.7 666 52.4
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 1.8e-183 646.7 666 51.7
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 4.1e-183 645.6 660 50.6
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.2e-181 639.8 663 52.0
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 8.0e-179 631.3 663 50.7
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.3e-178 629.8 640 52.3
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 4.0e-178 629.0 694 50.1
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 2.6e-177 626.3 706 49.3
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 2.9e-173 612.8 665 50.1
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 7.2e-172 608.2 680 49.3
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.6e-171 607.1 638 51.6
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 3.0e-170 602.8 674 49.3
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 6.8e-170 601.7 662 48.2
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 1.5e-169 600.5 662 48.3
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 1.3e-168 597.4 662 49.2
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 4.9e-168 595.5 663 47.7
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 6.4e-168 595.1 665 48.7
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 1.8e-167 593.6 662 48.5
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 5.4e-167 592.0 596 53.0
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 2.0e-166 590.1 664 49.2
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 1.3e-165 587.4 671 48.3
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 4.3e-164 582.4 664 48.6
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.0e-162 577.8 669 50.4
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 5.8e-161 572.0 753 44.5
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 2.2e-160 570.1 595 50.1
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 8.3e-160 568.2 655 46.4
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 6.0e-158 562.0 782 43.1
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 2.3e-157 560.1 489 56.2
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 3.0e-157 559.7 667 46.6
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 5.0e-157 558.9 665 46.6
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 2.5e-156 556.6 497 56.1
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 3.3e-156 556.2 670 46.3
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 4.3e-156 555.8 577 50.1
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 7.3e-156 555.1 669 46.9
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 6.8e-154 548.5 587 50.4
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.2e-153 547.7 650 45.8
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 1.5e-153 547.4 668 46.3
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 2.2e-152 543.5 420 60.5
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 5.4e-151 538.9 663 45.2
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.9e-148 530.4 498 54.4
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 3.3e-148 529.6 678 44.2
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 6.2e-147 525.4 595 47.6
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 8.9e-146 521.5 548 52.0
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 1.3e-144 517.7 460 55.4
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.1e-143 514.6 603 47.9
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 1.4e-143 514.2 657 42.5
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 2.8e-139 500.0 518 49.6
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 1.9e-135 487.3 659 43.9
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 1.7e-133 480.7 563 47.1
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 4.4e-129 466.1 674 41.2
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.6e-126 457.6 698 39.1
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 8.7e-125 451.8 698 39.5
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 1.1e-124 451.4 684 39.9
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 2.9e-120 436.8 484 47.3
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 4.9e-120 436.0 667 38.5
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 2.4e-119 433.7 712 37.6
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 4.2e-119 433.0 711 37.4
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 6.0e-118 429.1 591 40.3
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.0e-101 373.6 676 36.1
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 4.8e-99 366.3 806 33.1
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 2.4e-98 364.0 505 42.4
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 4.1e-98 363.2 505 42.4
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 2.4e-90 337.4 655 35.7
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 3.0e-85 320.5 447 41.4
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 5.9e-81 306.2 702 32.1
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 3.2e-79 300.4 262 56.1
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 1.4e-77 295.0 378 44.4
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 4.5e-73 280.0 513 36.6
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.9e-71 274.6 258 53.1
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 2.2e-67 261.2 257 52.5
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 1.4e-66 258.5 491 32.6
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 3.4e-52 210.7 378 37.3
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 2.3e-48 198.0 196 49.5
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 4.3e-47 193.7 385 34.3
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 2.0e-41 174.9 156 71.2
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 7.8e-41 172.9 439 30.3
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.8e-37 161.8 252 36.1
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 8.9e-37 159.5 175 45.7
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 9.8e-36 156.0 206 41.7
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 2.2e-35 154.8 172 44.2
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 4.9e-35 153.7 84 89.3
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.9e-31 141.7 495 28.3
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 8.4e-27 126.3 114 48.2
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 1.1e-23 115.9 197 42.1
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 1.1e-21 109.4 113 46.9
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 5.4e-18 97.1 123 54.5
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.5e-15 89.0 151 35.8
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 7.3e-15 86.7 131 44.3
AL6G43550 Arabidopsis lyrata HOM05D001764 ORTHO05D079172 1.2e-09 69.3 112 35.7
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 4.6e-09 67.4 94 39.4


User provided reference genes

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