Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 5.3e-110 401.0 195 100.0
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 2.3e-105 385.6 192 96.4
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 2.7e-98 362.1 193 92.7
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 2.7e-98 362.1 192 90.6
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 2.3e-97 359.0 191 90.1
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 5.2e-89 331.3 192 87.0
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 2.6e-88 328.9 192 82.8
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 2.8e-87 325.5 202 80.2
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 6.3e-87 324.3 195 82.6
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 1.4e-86 323.2 195 82.1
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 4.1e-86 321.6 192 82.8
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 5.3e-86 321.2 192 82.8
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 5.3e-86 321.2 192 82.8
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 1.0e-84 317.0 201 82.1
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 8.3e-79 297.4 160 90.6
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 3.6e-74 282.0 206 67.0
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.3e-71 273.5 200 67.5
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 6.3e-71 271.2 200 66.5
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 1.4e-70 270.0 202 64.4
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 4.1e-70 268.5 200 64.5
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.0e-68 263.8 194 65.5
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 5.0e-68 261.5 201 61.2
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 1.5e-67 260.0 195 63.1
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 1.9e-67 259.6 193 63.7
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 2.5e-67 259.2 203 62.1
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 2.5e-67 259.2 203 62.1
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 3.3e-67 258.8 203 62.6
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 4.3e-67 258.5 204 61.8
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 2.8e-66 255.8 200 63.0
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 3.6e-66 255.4 202 61.9
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 4.7e-66 255.0 189 63.5
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 4.7e-66 255.0 187 64.2
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 4.7e-66 255.0 197 64.5
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 4.7e-66 255.0 201 62.2
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.4e-65 253.4 198 62.6
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 2.3e-65 252.7 197 62.4
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 3.0e-65 252.3 193 64.8
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 3.0e-65 252.3 207 60.4
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 6.8e-65 251.1 195 60.5
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 6.8e-65 251.1 196 61.7
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 2.0e-64 249.6 199 61.3
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 2.0e-64 249.6 196 62.8
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 2.6e-64 249.2 192 64.1
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 3.4e-64 248.8 183 64.5
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 5.7e-64 248.1 201 62.2
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 5.7e-64 248.1 199 59.3
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 5.7e-64 248.1 194 61.9
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 7.5e-64 247.7 186 64.0
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 7.5e-64 247.7 206 58.7
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 9.8e-64 247.3 212 59.4
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 3.7e-63 245.4 210 59.5
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 3.7e-63 245.4 199 59.3
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 6.4e-63 244.6 192 63.5
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 5.4e-62 241.5 179 65.9
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 1.2e-61 240.4 200 59.0
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 1.2e-61 240.4 199 59.8
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 1.2e-61 240.4 199 59.8
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 3.5e-61 238.8 201 60.7
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 1.7e-60 236.5 199 58.3
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.7e-60 236.5 219 55.3
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 2.3e-60 236.1 200 59.0
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 2.3e-60 236.1 200 58.5
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 3.0e-60 235.7 198 61.1
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 3.0e-60 235.7 202 57.9
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 3.9e-60 235.3 199 60.3
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 3.9e-60 235.3 199 60.3
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 5.0e-60 235.0 201 57.2
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 5.0e-60 235.0 189 62.4
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 8.6e-60 234.2 188 61.2
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 1.1e-59 233.8 191 60.7
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.1e-59 233.8 219 55.3
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 1.5e-59 233.4 199 59.8
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 1.5e-59 233.4 193 62.7
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 2.5e-59 232.6 206 58.7
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 2.5e-59 232.6 198 57.6
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 2.5e-59 232.6 204 56.9
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 4.3e-59 231.9 213 56.3
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 4.3e-59 231.9 186 59.1
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 5.6e-59 231.5 191 58.6
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 5.6e-59 231.5 195 61.0
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.6e-58 229.9 191 58.6
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 1.6e-58 229.9 193 62.2
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 6.2e-58 228.0 204 54.9
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 8.0e-58 227.6 188 60.6
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 2.3e-57 226.1 201 57.2
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 2.3e-57 226.1 206 57.3
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 3.1e-57 225.7 184 62.5
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 6.8e-57 224.6 179 60.9
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 1.2e-56 223.8 181 59.1
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 2.0e-56 223.0 177 61.0
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 7.5e-56 221.1 178 58.4
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 8.3e-55 217.6 191 55.5
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 3.2e-54 215.7 191 55.5
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 4.1e-54 215.3 197 57.4
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 2.0e-53 213.0 164 65.9
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 3.3e-51 205.7 189 55.6
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 1.4e-49 200.3 184 57.6
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 2.3e-49 199.5 106 89.6
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 9.9e-48 194.1 144 64.6
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 1.7e-44 183.3 157 59.9
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 4.7e-42 175.3 144 60.4
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.5e-40 170.2 202 46.5
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 4.4e-40 168.7 117 66.7
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 3.8e-39 165.6 141 58.9
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 6.4e-39 164.9 227 41.9
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 6.0e-37 158.3 141 54.6
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.0e-36 157.5 119 66.4
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 1.0e-36 157.5 189 46.6
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 2.3e-36 156.4 153 51.0
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.4e-33 147.1 132 53.0
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 1.4e-33 147.1 117 58.1
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 9.0e-33 144.4 153 49.7
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 3.4e-32 142.5 135 48.1
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 1.1e-19 100.9 115 50.4
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 3.3e-19 99.4 102 52.0
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 3.1e-17 92.8 67 64.2
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 3.5e-13 79.3 58 69.0
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 7.9e-13 78.2 48 68.8
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 3.9e-12 75.9 134 35.8
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 1.5e-08 63.9 85 44.7
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 3.2e-06 56.2 76 35.5


User provided reference genes

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