Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.1e-105 386.7 213 100.0
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.5e-86 321.6 213 85.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 8.2e-80 300.8 220 80.0
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.1e-79 298.9 218 79.4
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-76 289.7 214 79.9
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 3.2e-76 288.9 214 79.4
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.3e-76 287.3 213 76.1
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 7.9e-75 284.3 205 78.0
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 6.7e-74 281.2 219 76.3
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 6.7e-74 281.2 219 76.3
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 8.7e-74 280.8 220 75.9
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 8.7e-74 280.8 217 78.8
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.6e-46 190.3 209 57.9
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 7.5e-41 171.4 194 54.6
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 2.9e-37 159.5 184 53.3
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.5e-36 157.1 187 50.8
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.0e-34 151.0 208 46.6
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 3.0e-34 149.4 207 46.9
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.0e-34 149.4 187 50.8
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 3.0e-34 149.4 214 45.8
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.0e-34 149.1 188 48.4
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 6.8e-34 148.3 203 47.3
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.2e-33 147.5 188 45.7
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 1.2e-33 147.5 189 49.7
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 3.4e-33 146.0 212 48.6
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.4e-33 145.6 216 46.8
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 7.5e-33 144.8 186 46.2
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 7.5e-33 144.8 186 48.9
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.3e-32 144.1 188 48.9
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.7e-32 143.7 188 46.8
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.8e-32 142.9 211 44.5
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.8e-32 142.9 186 44.6
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.9e-32 142.1 208 45.2
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.3e-32 141.7 217 45.6
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 6.3e-32 141.7 212 44.3
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.3e-32 141.4 221 47.1
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 8.3e-32 141.4 217 45.6
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.1e-31 141.0 221 47.1
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 1.8e-31 140.2 186 45.2
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.4e-31 139.8 199 44.2
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.4e-31 139.8 221 50.2
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 3.1e-31 139.4 221 46.2
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.1e-31 139.4 221 46.2
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.1e-31 139.4 221 46.2
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 3.1e-31 139.4 205 44.9
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.0e-31 138.3 221 46.2
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 9.2e-31 137.9 188 45.2
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.2e-30 137.5 190 43.2
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.0e-30 136.7 197 48.2
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 7.7e-30 134.8 186 45.7
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.0e-29 134.4 187 48.7
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.3e-29 134.0 196 48.0
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 3.8e-29 132.5 216 44.9
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 3.8e-29 132.5 187 44.9
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 5.0e-29 132.1 191 45.0
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 8.6e-29 131.3 187 45.5
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 1.1e-28 131.0 186 44.1
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 1.1e-28 131.0 186 44.6
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.9e-28 130.2 211 43.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.5e-28 129.8 169 46.2
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 4.3e-28 129.0 155 49.7
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 4.3e-28 129.0 208 43.8
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 4.3e-28 129.0 194 45.9
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.5e-28 127.9 186 47.8
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 9.5e-28 127.9 221 43.0
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.2e-27 127.5 197 44.2
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.6e-27 127.1 186 47.8
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.1e-27 126.7 208 42.3
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.4e-26 124.0 187 42.2
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.8e-26 123.6 210 42.4
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.8e-26 123.6 187 42.8
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.8e-26 123.6 213 44.1
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.8e-26 123.6 188 45.7
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.3e-26 123.2 191 44.5
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 2.3e-26 123.2 191 45.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.3e-26 123.2 210 41.9
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.3e-26 123.2 190 43.2
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 4.0e-26 122.5 188 44.1
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 4.0e-26 122.5 160 48.8
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.2e-26 122.1 187 42.2
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 6.8e-26 121.7 208 41.8
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.5e-25 120.6 211 43.6
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.5e-25 120.6 186 43.0
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.0e-25 120.2 151 49.0
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.0e-25 120.2 210 42.4
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 3.4e-25 119.4 189 45.0
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 3.4e-25 119.4 192 44.3
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 3.4e-25 119.4 187 40.6
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 4.4e-25 119.0 188 46.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 5.7e-25 118.6 189 43.4
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 5.7e-25 118.6 210 42.9
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 5.7e-25 118.6 210 42.9
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 5.7e-25 118.6 213 42.3
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 7.5e-25 118.2 216 42.1
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.3e-24 117.5 185 43.2
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.3e-24 117.5 125 56.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.7e-24 117.1 188 43.1
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.9e-24 116.3 185 42.7
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.9e-24 116.3 212 39.6
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 4.9e-24 115.5 209 42.1
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 4.9e-24 115.5 209 42.1
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 4.9e-24 115.5 189 42.3
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 8.3e-24 114.8 213 40.8
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.1e-23 114.4 187 40.6
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.4e-23 114.0 208 43.3
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-23 114.0 187 46.0
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.8e-23 113.6 187 41.7
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-23 113.6 188 41.5
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-23 113.2 186 43.5
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-23 113.2 187 42.2
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 2.4e-23 113.2 219 38.8
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.2e-23 112.8 186 41.9
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 3.2e-23 112.8 186 40.9
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.1e-23 112.5 189 42.3
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.6e-22 110.5 192 40.6
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.6e-22 110.5 187 42.8
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.0e-22 110.2 187 42.8
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 2.0e-22 110.2 204 45.1
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.7e-22 109.8 185 42.2
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 2.7e-22 109.8 187 42.8
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 2.7e-22 109.8 217 36.4
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 3.5e-22 109.4 186 42.5
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 3.5e-22 109.4 207 41.5
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 4.6e-22 109.0 189 41.3
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.6e-22 109.0 187 40.6
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.6e-22 109.0 183 39.3
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 5.9e-22 108.6 187 36.4
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 5.9e-22 108.6 194 41.8
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 7.8e-22 108.2 188 38.3
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.0e-21 107.8 195 42.1
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-21 107.5 118 53.4
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.3e-21 107.5 201 37.8
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 6.6e-21 105.1 203 37.9
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-20 104.4 198 38.9
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.1e-20 104.4 193 39.4
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 1.9e-20 103.6 133 48.9
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 4.3e-20 102.4 192 41.7
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 4.3e-20 102.4 188 43.6
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.6e-20 102.1 193 41.5
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 5.6e-20 102.1 218 37.6
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 5.6e-20 102.1 190 39.5
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 7.3e-20 101.7 194 39.7
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 1.2e-19 100.9 201 39.3
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.0e-18 97.8 188 38.8
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.1e-18 96.3 194 39.2
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 8.9e-18 94.7 201 35.3
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.2e-17 94.4 191 38.7
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.2e-17 94.4 214 35.5
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 4.4e-17 92.4 211 39.8
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 5.8e-17 92.0 225 35.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.7e-16 90.5 176 39.8
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.7e-16 90.5 168 36.3
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.7e-16 90.5 120 46.7
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.4e-16 88.6 187 40.1
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.4e-16 88.6 187 40.1
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.1e-15 87.8 186 34.9
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.4e-15 86.7 208 34.6
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.6e-14 84.0 139 43.2
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 4.6e-14 82.4 188 33.5
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.0e-13 81.3 136 44.1
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.0e-13 81.3 147 43.5
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.0e-13 79.0 188 33.0
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 8.6e-13 78.2 189 38.1
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 3.3e-12 76.3 139 41.7
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.3e-12 75.9 286 30.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 7.3e-12 75.1 208 32.2
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.6e-11 73.9 192 31.8
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.6e-11 73.9 187 32.1
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.1e-11 73.6 208 31.7
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 6.2e-11 72.0 187 31.0
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.1e-10 71.2 172 32.6
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.4e-10 70.9 216 32.4
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.1e-10 69.7 187 33.7
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 5.2e-10 68.9 187 30.5
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.8e-10 68.6 167 32.9
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 8.9e-10 68.2 171 30.4
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.6e-09 66.6 70 58.6
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 3.4e-09 66.2 189 31.2
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 8.3e-08 61.6 130 33.1
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 9.2e-07 58.2 76 44.7


User provided reference genes

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