Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G16680 Arabidopsis lyrata HOM05D007071 ORTHO05D008677 1.5e-175 619.4 316 100.0
AT5G06590 Arabidopsis thaliana HOM05D007071 ORTHO05D008677 2.0e-162 575.9 316 94.3
Carub.0006s0547 Capsella rubella HOM05D007071 ORTHO05D008677 6.3e-145 517.7 316 85.4
Thhalv10014151m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 1.1e-141 506.9 316 82.3
CARHR206610 Cardamine hirsuta HOM05D007071 ORTHO05D008677 3.2e-141 505.4 319 81.8
Sp6g36270 Schrenkiella parvula HOM05D007071 ORTHO05D008677 1.8e-136 489.6 328 79.3
Aa31sc291G40 Aethionema arabicum HOM05D007071 ORTHO05D008677 2.5e-125 452.6 319 75.5
C09p70180 Brassica napus HOM05D007071 ORTHO05D008677 3.0e-123 445.7 322 73.6
BolC9t59762H Brassica oleracea HOM05D007071 ORTHO05D008677 6.8e-123 444.5 322 73.6
A10p29800 Brassica napus HOM05D007071 ORTHO05D008677 2.4e-120 436.0 322 72.0
BraA10t45019Z Brassica rapa HOM05D007071 ORTHO05D008677 1.7e-118 429.9 322 71.4
Thhalv10014358m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 2.7e-111 406.0 316 69.9
THA.LOC104809942 Tarenaya hassleriana HOM05D007071 ORTHO05D008677 1.9e-101 373.2 318 63.2
Gorai.006G146400 Gossypium raimondii HOM05D007071 ORTHO05D008677 1.6e-76 290.4 319 51.7
Gohir.A09G131600 Gossypium hirsutum HOM05D007071 ORTHO05D008677 2.1e-76 290.0 319 53.0
Gohir.D09G127800 Gossypium hirsutum HOM05D007071 ORTHO05D008677 8.1e-76 288.1 320 52.8
Potri.016G064200 Populus trichocarpa HOM05D007071 ORTHO05D008677 1.1e-75 287.7 319 50.8
Duzib093G1750 Durio zibethinus HOM05D007071 ORTHO05D008677 2.4e-75 286.6 320 51.2
TWI77G0807 Tripterygium wilfordii HOM05D007071 ORTHO05D008677 4.5e-74 282.3 329 50.8
Cpa.g.sc222.1 Carica papaya HOM05D007071 ORTHO05D008677 1.7e-73 280.4 327 52.3
Cfa020101 Carpinus fangiana HOM05D007071 ORTHO05D008677 2.2e-73 280.0 324 49.7
Actinidia37784 Actinidia chinensis HOM05D007071 ORTHO05D008677 4.2e-72 275.8 319 48.3
Dinv25088 Davidia involucrata HOM05D007071 ORTHO05D008677 5.4e-72 275.4 314 49.0
Atru.chr8.1251 Acer truncatum HOM05D007071 ORTHO05D008677 2.7e-71 273.1 302 50.7
CANSAT64G1821 Cannabis sativa HOM05D007071 ORTHO05D008677 6.7e-70 268.5 328 48.2
Manes.08G038400 Manihot esculenta HOM05D007071 ORTHO05D008677 8.7e-70 268.1 327 48.9
Aqoxy2G00613 Aquilegia oxysepala HOM05D007071 ORTHO05D008677 2.5e-69 266.5 317 49.8
CiPaw.09G025100 Carya illinoinensis HOM05D007071 ORTHO05D008677 2.5e-69 266.5 319 50.5
Lj1g0020560 Lotus japonicus HOM05D007071 ORTHO05D008677 2.1e-68 263.5 315 47.6
CsaV3_3G038410 Cucumis sativus L. HOM05D007071 ORTHO05D008677 2.8e-68 263.1 328 49.4
Nn2g14444 Nelumbo nucifera HOM05D007071 ORTHO05D008677 2.8e-68 263.1 326 47.9
PGR004G1089 Punica granatum HOM05D007071 ORTHO05D008677 2.8e-68 263.1 316 48.1
Sabra16G0066300 Salix brachista HOM05D007071 ORTHO05D008677 1.8e-67 260.4 372 43.3
Sed0020351 Sechium edule HOM05D007071 ORTHO05D008677 1.2e-66 257.7 325 47.1
MELO3C009585.2 Cucumis melo HOM05D007071 ORTHO05D008677 1.5e-66 257.3 328 48.5
Sc01g0005210 Simmondsia chinensis HOM05D007071 ORTHO05D008677 2.0e-66 256.9 326 44.8
Glyma.03G206000 Glycine max HOM05D007071 ORTHO05D008677 2.6e-66 256.5 317 47.0
QL07p025881 Quercus lobata HOM05D007071 ORTHO05D008677 4.5e-66 255.8 322 47.2
Glyma.19G203500 Glycine max HOM05D007071 ORTHO05D008677 7.6e-66 255.0 316 47.2
VMungo1383G1243 Vigna mungo HOM05D007071 ORTHO05D008677 6.5e-65 251.9 317 46.4
PSO339G2219 Papaver somniferum HOM05D007071 ORTHO05D008677 5.5e-64 248.8 327 45.9
vmacro07528 Vaccinium macrocarpon HOM05D007071 ORTHO05D008677 2.3e-62 243.4 335 43.3
RcHm_v2.0_Chr3g0477671 Rosa chinensis HOM05D007071 ORTHO05D008677 4.8e-60 235.7 317 46.7
ECA248G1335 Erigeron canadensis HOM05D007071 ORTHO05D008677 6.2e-60 235.3 314 43.3
ClCG10G017880 Citrullus lanatus HOM05D007071 ORTHO05D008677 8.2e-60 235.0 388 41.5
Ciclev10012576m.g Citrus clementina HOM05D007071 ORTHO05D008677 1.1e-59 234.6 253 52.6
Prupe.7G088000 Prunus persica HOM05D007071 ORTHO05D008677 1.1e-59 234.6 323 46.4
FvH4_6g21190 Fragaria vesca HOM05D007071 ORTHO05D008677 1.4e-59 234.2 315 45.7
MBI11_g24568_MAGBIO Magnolia biondii HOM05D007071 ORTHO05D008677 6.9e-59 231.9 378 40.5
Phvul.001G199700 Phaseolus vulgaris HOM05D007071 ORTHO05D008677 4.5e-58 229.2 331 43.8
GSVIVG01022502001 Vitis vinifera HOM05D007071 ORTHO05D008677 5.0e-57 225.7 316 44.9
Peaxi162Scf00645g00018 Petunia axillaris HOM05D007071 ORTHO05D008677 1.9e-56 223.8 319 44.2
Peaxi162Scf00425g00036 Petunia axillaris HOM05D007071 ORTHO05D008677 2.5e-56 223.4 319 44.2
MD14G1046200 Malus domestica HOM05D007071 ORTHO05D008677 4.2e-56 222.6 327 44.3
Medtr7g107150 Medicago truncatula HOM05D007071 ORTHO05D008677 9.3e-56 221.5 311 44.4
Sopen01g021160 Solanum pennellii HOM05D007071 ORTHO05D008677 1.6e-55 220.7 314 41.4
SGA_v2.0_scaffold31G12809 Striga asiatica HOM05D007071 ORTHO05D008677 6.1e-55 218.8 323 41.5
HanXRQChr11g0347671 Helianthus annuus HOM05D007071 ORTHO05D008677 1.3e-54 217.6 322 42.5
MSTRG.5919 Avicennia marina HOM05D007071 ORTHO05D008677 3.9e-54 216.1 314 40.4
TPR.G14411 Trifolium pratense HOM05D007071 ORTHO05D008677 8.7e-54 214.9 280 47.9
Rhsim03G0057500 Rhododendron simsii HOM05D007071 ORTHO05D008677 5.7e-53 212.2 281 44.8
Lalb_Chr25g0287781 Lupinus albus HOM05D007071 ORTHO05D008677 9.7e-53 211.5 333 42.9
ATR0697G054 Amborella trichopoda HOM05D007071 ORTHO05D008677 1.1e-51 208.0 359 37.9
Psat3g026600 Pisum sativum HOM05D007071 ORTHO05D008677 1.1e-51 208.0 315 43.2
COL.COLO4_29462 Corchorus olitorius HOM05D007071 ORTHO05D008677 3.1e-51 206.5 255 47.5
Nitab4.5_0000117g0100 Nicotiana tabacum HOM05D007071 ORTHO05D008677 3.1e-51 206.5 345 40.6
Lsat_1_v5_gn_1_56481 Lactuca sativa HOM05D000137 ORTHO05D000503 6.9e-51 205.3 277 44.4
Haze_20090 Corylus avellana HOM05D007071 ORTHO05D008677 2.6e-50 203.4 257 48.6
Ah.12g059560 Amaranthus hybridus HOM05D007071 ORTHO05D008677 2.9e-49 199.9 323 41.5
Thecc.05G182200 Theobroma cacao HOM05D007071 ORTHO05D008677 3.8e-49 199.5 192 55.2
Cc06_g07070 Coffea canephora HOM05D007071 ORTHO05D008677 5.0e-49 199.1 307 42.3
TAR633G1119 Trochodendron aralioides HOM05D007071 ORTHO05D008677 5.0e-49 199.1 188 55.3
FAN09G1879 Fragaria x ananassa HOM05D007071 ORTHO05D008677 5.5e-48 195.7 296 41.6
Hund10779 Selenicereus undatus HOM05D007071 ORTHO05D008677 9.4e-48 194.9 315 39.7
FAN14G3447 Fragaria x ananassa HOM05D007071 ORTHO05D008677 1.2e-47 194.5 286 43.4
Migut.J00748 Erythranthe guttata HOM05D007071 ORTHO05D008677 1.4e-46 191.0 314 39.2
arahy.Tifrunner.gnm1.ann1.B8MRUG Arachis hypogaea HOM05D007071 ORTHO05D008677 1.8e-46 190.7 308 38.3
arahy.Tifrunner.gnm1.ann1.P13BQJ Arachis hypogaea HOM05D007071 ORTHO05D008677 2.3e-46 190.3 309 39.8
Peaxi162Scf00414g00006 Petunia axillaris HOM05D007071 ORTHO05D008677 1.1e-45 188.0 316 41.5
Oeu028127.1 Olea europaea HOM05D007071 ORTHO05D008677 5.7e-45 185.7 263 44.1
Nitab4.5_0005508g0020 Nicotiana tabacum HOM05D007071 ORTHO05D008677 2.8e-44 183.3 296 39.2
Solyc01g056990.3 Solanum lycopersicum HOM05D007071 ORTHO05D008677 6.3e-44 182.2 259 42.5
EL10Ac5g11787 Beta vulgaris HOM05D007071 ORTHO05D008677 1.1e-43 181.4 287 41.5
Eucgr.A02532 Eucalyptus grandis HOM05D007071 ORTHO05D008677 2.0e-42 177.2 211 46.9
PGSC0003DMG400031498 Solanum tuberosum HOM05D007071 ORTHO05D008677 1.0e-38 164.9 285 37.2
AUR62036298 Chenopodium quinoa HOM05D007071 ORTHO05D008677 6.7e-38 162.2 320 36.6
DCAR_020676 Daucus carota HOM05D007071 ORTHO05D008677 1.5e-37 161.0 175 49.7
AUR62038410 Chenopodium quinoa HOM05D000573 ORTHO05D008677 1.1e-35 154.8 319 37.0
Gorai.007G240500 Gossypium raimondii HOM05D007071 ORTHO05D008677 3.5e-34 149.8 181 49.7
SEGI_27522 Sequoiadendron giganteum HOM05D007071 ORTHO05D008677 1.0e-33 148.3 361 31.0
SHI31768 Sapria himalayana HOM05D007071 ORTHO05D008677 8.2e-28 128.6 109 54.1
Eucgr.C00285 Eucalyptus grandis HOM05D007071 ORTHO05D008677 1.1e-27 128.3 101 60.4
CSS0047921 Camellia sinensis var. sinensis HOM05D007071 ORTHO05D008677 1.6e-26 124.4 245 35.9
CDE10G1223 Ceratophyllum demersum HOM05D007071 ORTHO05D008677 1.0e-25 121.7 186 38.7
Gohir.A07G089166 Gossypium hirsutum HOM05D007071 ORTHO05D008677 1.3e-25 121.3 85 68.2
AL5G44100 Arabidopsis lyrata HOM05D007071 ORTHO05D008677 4.8e-20 102.8 69 81.2
Zm00001eb134480 Zea mays HOM05D007071 ORTHO05D008677 8.3e-20 102.1 260 31.2
Gohir.A06G128402 Gossypium hirsutum HOM05D007071 ORTHO05D008677 1.0e-17 95.1 160 40.6
AagrBONN_evm.TU.Sc2ySwM_117.1490 Anthoceros agrestis HOM05D007071 ORTHO05D008677 2.9e-17 93.6 344 24.7
SMO165G0174 Selaginella moellendorffii HOM05D007071 ORTHO05D008677 1.5e-16 91.3 329 26.4
Pp3c26_10880 Physcomitrium patens HOM05D007071 ORTHO05D008677 1.9e-16 90.9 400 25.0
Eucgr.A02531 Eucalyptus grandis HOM05D007071 ORTHO05D008677 3.6e-15 86.7 73 60.3
Gohir.A07G056200 Gossypium hirsutum HOM05D007071 ORTHO05D008677 1.7e-12 77.8 119 40.3
CSS0001330 Camellia sinensis var. sinensis HOM05D007071 ORTHO05D008677 1.2e-10 71.6 65 52.3
MD12G1047800 Malus domestica HOM05D007071 ORTHO05D008677 1.2e-10 71.6 75 50.7
TPR.G40805 Trifolium pratense HOM05D007071 ORTHO05D008677 1.0e-09 68.6 65 53.8
CiPaw.16G104200 Carya illinoinensis HOM05D007071 ORTHO05D008677 1.3e-09 68.2 66 56.1
Pp3c4_24350 Physcomitrium patens HOM05D007071 ORTHO05D008677 1.3e-09 68.2 97 36.1
QL02p030777 Quercus lobata HOM05D007071 ORTHO05D008677 1.3e-09 68.2 45 66.7
MD12G1047700 Malus domestica HOM05D007071 ORTHO05D008677 1.7e-09 67.8 102 44.1
Os12g0623400 Oryza sativa ssp. japonica HOM05D007071 ORTHO05D008677 3.8e-09 66.6 70 48.6
Actinidia03957 Actinidia chinensis HOM05D002116 ORTHO05D002438 1.5e-08 64.7 41 75.6
Mapoly0045s0075 Marchantia polymorpha HOM05D007071 ORTHO05D008677 1.4e-06 58.2 117 30.8
PGSC0003DMG400019076 Solanum tuberosum HOM05D007071 ORTHO05D008677 4.0e-06 56.6 58 48.3


User provided reference genes

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