Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 1.0e-140 503.4 256 100.0
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 4.8e-127 458.0 256 92.2
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 3.0e-113 412.1 253 85.4
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 1.1e-102 377.1 266 77.1
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 1.8e-97 359.8 263 73.8
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 4.0e-97 358.6 264 73.5
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 6.8e-97 357.8 263 74.5
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 8.8e-97 357.5 263 74.1
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 3.7e-95 352.1 264 72.0
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 3.7e-95 352.1 264 76.5
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 9.1e-94 347.4 271 71.6
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 2.9e-84 315.8 267 64.0
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 5.2e-81 305.1 262 62.2
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 1.3e-71 273.9 263 57.0
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 2.9e-71 272.7 269 56.5
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 4.9e-71 271.9 211 64.5
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 3.2e-70 269.2 269 56.5
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 1.2e-69 267.3 241 58.5
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 1.2e-69 267.3 199 73.9
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 2.1e-69 266.5 211 62.6
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 2.1e-69 266.5 268 54.9
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 2.1e-69 266.5 211 65.4
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 3.5e-69 265.8 257 55.3
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 7.8e-69 264.6 233 58.8
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 1.0e-68 264.2 211 64.0
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 1.3e-68 263.8 222 58.6
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 1.7e-68 263.5 209 64.1
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 1.7e-68 263.5 270 53.0
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 3.9e-68 262.3 273 54.2
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 1.1e-67 260.8 268 54.1
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 1.9e-67 260.0 267 54.3
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 3.3e-67 259.2 219 59.8
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 4.3e-67 258.8 269 53.2
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 7.3e-67 258.1 265 54.0
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.6e-66 256.9 188 68.1
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 2.1e-66 256.5 215 60.0
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 2.8e-66 256.1 270 51.9
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 2.8e-66 256.1 266 55.6
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 4.7e-66 255.4 269 54.3
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 6.2e-66 255.0 273 52.0
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 5.2e-65 251.9 207 62.8
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 6.8e-65 251.5 197 63.5
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 6.8e-65 251.5 212 60.8
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 8.9e-65 251.1 201 62.2
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 2.0e-64 250.0 209 61.2
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.0e-64 250.0 194 64.4
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 2.6e-64 249.6 227 59.5
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 4.4e-64 248.8 188 66.5
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 5.8e-64 248.4 189 66.1
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 9.9e-64 247.7 206 60.2
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 9.9e-64 247.7 261 53.6
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 1.7e-63 246.9 219 57.1
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 1.7e-63 246.9 212 59.0
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 2.2e-63 246.5 263 52.5
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 2.2e-63 246.5 265 50.9
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 2.2e-63 246.5 261 52.9
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 2.9e-63 246.1 212 60.4
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 2.9e-63 246.1 205 60.0
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 4.9e-63 245.4 210 61.0
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 6.4e-63 245.0 241 55.2
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 1.1e-62 244.2 257 52.5
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 1.4e-62 243.8 205 61.5
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.9e-62 243.4 177 65.5
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 2.4e-62 243.0 211 58.3
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 3.2e-62 242.7 211 59.2
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 2.1e-61 240.0 261 52.1
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 2.1e-61 240.0 234 54.3
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 3.5e-61 239.2 212 58.5
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 3.5e-61 239.2 213 58.7
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 3.5e-61 239.2 213 58.7
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 6.0e-61 238.4 209 57.4
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 6.0e-61 238.4 194 62.4
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 1.7e-60 236.9 213 58.2
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 2.3e-60 236.5 212 56.6
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 6.6e-60 235.0 191 60.7
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 2.5e-59 233.0 207 55.6
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 3.3e-59 232.6 225 55.1
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 3.3e-59 232.6 204 58.8
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 7.3e-59 231.5 269 51.7
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 1.6e-58 230.3 234 53.0
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 3.6e-58 229.2 197 59.4
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 4.7e-58 228.8 191 58.6
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 1.1e-57 227.6 204 57.8
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 1.5e-56 223.8 260 50.0
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 3.4e-56 222.6 251 51.4
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 5.8e-56 221.9 223 53.4
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 7.6e-56 221.5 262 50.4
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 4.9e-55 218.8 223 54.7
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 5.4e-54 215.3 167 64.1
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 2.1e-53 213.4 259 47.1
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 6.2e-50 201.8 204 52.5
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 1.1e-49 201.1 154 64.9
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 2.4e-49 199.9 190 52.1
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 3.1e-49 199.5 208 53.4
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 6.9e-49 198.4 247 46.2
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 1.3e-47 194.1 163 62.0
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 4.9e-47 192.2 154 61.7
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 1.1e-46 191.0 167 58.1
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 1.4e-46 190.7 153 63.4
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.4e-46 189.9 143 66.4
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 5.1e-44 182.2 177 55.4
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 2.5e-43 179.9 178 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 5.6e-43 178.7 213 44.1
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 9.9e-40 167.9 220 43.6
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 8.4e-39 164.9 151 55.6
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 5.4e-38 162.2 130 64.6
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 1.2e-37 161.0 186 51.1
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.8e-36 157.1 193 48.7
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.8e-33 147.1 154 50.0
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 6.9e-33 145.2 199 42.7
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 6.9e-33 145.2 206 40.8
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 7.6e-32 141.7 113 60.2
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 3.4e-24 116.3 197 36.0
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 3.4e-24 116.3 197 36.0
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 1.1e-19 101.3 103 49.5
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 1.1e-19 101.3 123 41.5
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 1.4e-17 94.4 82 58.5
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 2.4e-17 93.6 113 49.6
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 2.1e-13 80.5 157 35.7
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 2.1e-13 80.5 227 29.1
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 3.0e-12 76.6 100 45.0
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 8.8e-12 75.1 103 42.7
C04p10650 Brassica napus HOM05D001890 ORTHO05D008163 2.6e-08 63.5 30 90.0
SalBow1G6520 Salvia bowleyana HOM05D001890 ORTHO05D008163 6.5e-07 58.9 72 47.2
Aa31LG5G17140 Aethionema arabicum HOM05D001890 ORTHO05D008163 4.2e-06 56.2 36 69.4


User provided reference genes

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